Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JYA73_RS07435 Genome accession   NZ_CP071104
Coordinates   1579657..1580343 (-) Length   228 a.a.
NCBI ID   WP_211021804.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PS/BAC/317/16/W     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574657..1585343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA73_RS07415 (JYA73_001485) rpsT 1575570..1575821 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  JYA73_RS07420 (JYA73_001486) holA 1575866..1576841 (-) 976 Protein_1467 DNA polymerase III subunit delta -
  JYA73_RS07425 (JYA73_001487) comEC 1576898..1579099 (-) 2202 WP_211021803.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYA73_RS07430 (JYA73_001488) - 1579104..1579565 (-) 462 WP_000439692.1 ComE operon protein 2 -
  JYA73_RS07435 (JYA73_001489) comEA 1579657..1580343 (-) 687 WP_211021804.1 ComEA family DNA-binding protein Machinery gene
  JYA73_RS07440 (JYA73_001490) - 1580383..1581099 (-) 717 WP_000084835.1 class I SAM-dependent methyltransferase -
  JYA73_RS07445 (JYA73_001491) rsfS 1581102..1581455 (-) 354 WP_001088020.1 ribosome silencing factor -
  JYA73_RS07450 (JYA73_001492) yqeK 1581456..1582040 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JYA73_RS07455 (JYA73_001493) nadD 1582030..1582599 (-) 570 WP_000822938.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  JYA73_RS07460 (JYA73_001494) yhbY 1582602..1582892 (-) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  JYA73_RS07465 (JYA73_001495) aroE 1582896..1583702 (-) 807 WP_211021806.1 shikimate dehydrogenase -
  JYA73_RS07470 (JYA73_001496) yqeH 1583716..1584816 (-) 1101 WP_001280134.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25796.41 Da        Isoelectric Point: 9.3383

>NTDB_id=542900 JYA73_RS07435 WP_211021804.1 1579657..1580343(-) (comEA) [Staphylococcus aureus strain PS/BAC/317/16/W]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTVLKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLNSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=542900 JYA73_RS07435 WP_211021804.1 1579657..1580343(-) (comEA) [Staphylococcus aureus strain PS/BAC/317/16/W]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
TTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAATTCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956
  comEA Staphylococcus aureus N315

96.035

99.561

0.956