Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JYA73_RS05670 Genome accession   NZ_CP071104
Coordinates   1188982..1189854 (+) Length   290 a.a.
NCBI ID   WP_211022089.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PS/BAC/317/16/W     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1183982..1194854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA73_RS05650 (JYA73_001131) sucC 1184096..1185262 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  JYA73_RS05655 (JYA73_001132) sucD 1185284..1186192 (+) 909 WP_000110252.1 succinate--CoA ligase subunit alpha -
  JYA73_RS05660 (JYA73_001133) - 1186419..1187537 (+) 1119 WP_211022087.1 LysM peptidoglycan-binding domain-containing protein -
  JYA73_RS05665 (JYA73_001134) fmhC 1187565..1188809 (+) 1245 WP_000672867.1 FemA/FemB family glycyltransferase FmhC -
  JYA73_RS05670 (JYA73_001135) dprA 1188982..1189854 (+) 873 WP_211022089.1 DNA-processing protein DprA Machinery gene
  JYA73_RS05675 (JYA73_001136) topA 1190028..1192103 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  JYA73_RS05680 (JYA73_001137) trmFO 1192259..1193566 (+) 1308 WP_000195263.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33505.92 Da        Isoelectric Point: 9.5191

>NTDB_id=542887 JYA73_RS05670 WP_211022089.1 1188982..1189854(+) (dprA) [Staphylococcus aureus strain PS/BAC/317/16/W]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYRGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEIGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=542887 JYA73_RS05670 WP_211022089.1 1188982..1189854(+) (dprA) [Staphylococcus aureus strain PS/BAC/317/16/W]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATACCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAGAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGCACATTAGC
ATTAAGAAATAAAATAGAAGAAATAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986