Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JYA70_RS02115 Genome accession   NZ_CP071102
Coordinates   389841..390527 (+) Length   228 a.a.
NCBI ID   WP_001837962.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CI/BAC/25/13/W     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384841..395527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA70_RS02080 (JYA70_000416) yqeH 385368..386468 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  JYA70_RS02085 (JYA70_000417) aroE 386482..387288 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  JYA70_RS02090 (JYA70_000418) yhbY 387292..387582 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  JYA70_RS02095 (JYA70_000419) nadD 387585..388154 (+) 570 WP_000725168.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  JYA70_RS02100 (JYA70_000420) yqeK 388144..388728 (+) 585 WP_001019322.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JYA70_RS02105 (JYA70_000421) rsfS 388729..389082 (+) 354 WP_001088020.1 ribosome silencing factor -
  JYA70_RS02110 (JYA70_000422) - 389085..389801 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  JYA70_RS02115 (JYA70_000423) comEA 389841..390527 (+) 687 WP_001837962.1 ComEA family DNA-binding protein Machinery gene
  JYA70_RS02120 (JYA70_000424) - 390619..391080 (+) 462 WP_000439691.1 ComE operon protein 2 -
  JYA70_RS02125 (JYA70_000425) comEC 391085..393286 (+) 2202 WP_001837960.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYA70_RS02130 (JYA70_000426) holA 393343..394317 (+) 975 WP_001282561.1 DNA polymerase III subunit delta -
  JYA70_RS02135 (JYA70_000427) rpsT 394362..394613 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25861.57 Da        Isoelectric Point: 9.6751

>NTDB_id=542842 JYA70_RS02115 WP_001837962.1 389841..390527(+) (comEA) [Staphylococcus aureus strain CI/BAC/25/13/W]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=542842 JYA70_RS02115 WP_001837962.1 389841..390527(+) (comEA) [Staphylococcus aureus strain CI/BAC/25/13/W]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.559

99.561

0.991
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974