Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LNN45_RS06070 Genome accession   NZ_CP086520
Coordinates   1229317..1230054 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Ec-042-T20-ESBL     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224317..1235054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNN45_RS06040 (LNN45_06040) yfiL 1224475..1224840 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  LNN45_RS06045 (LNN45_06045) aroF 1225050..1226120 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LNN45_RS06050 (LNN45_06050) tyrA 1226131..1227252 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LNN45_RS06055 (LNN45_06055) pheA 1227295..1228455 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  LNN45_RS06060 (LNN45_06060) pheL 1228554..1228601 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  LNN45_RS06065 (LNN45_06065) raiA 1228705..1229046 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LNN45_RS06070 (LNN45_06070) comL 1229317..1230054 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LNN45_RS06075 (LNN45_06075) rluD 1230189..1231169 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LNN45_RS06080 (LNN45_06080) yfiH 1231166..1231897 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  LNN45_RS06085 (LNN45_06085) clpC 1232027..1234600 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=542652 LNN45_RS06070 WP_000197686.1 1229317..1230054(-) (comL) [Escherichia coli strain Ec-042-T20-ESBL]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=542652 LNN45_RS06070 WP_000197686.1 1229317..1230054(-) (comL) [Escherichia coli strain Ec-042-T20-ESBL]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376