Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JY500_RS13320 Genome accession   NZ_CP071060
Coordinates   2932425..2933171 (+) Length   248 a.a.
NCBI ID   WP_246479622.1    Uniprot ID   -
Organism   Niveibacterium microcysteis strain HC41     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2927425..2938171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY500_RS13295 (JY500_13295) phbB 2927598..2928338 (-) 741 WP_172198758.1 acetoacetyl-CoA reductase -
  JY500_RS13300 (JY500_13300) phaC 2928542..2930281 (-) 1740 WP_206253066.1 class I poly(R)-hydroxyalkanoic acid synthase -
  JY500_RS13305 (JY500_13305) - 2930448..2930666 (+) 219 WP_206253068.1 hypothetical protein -
  JY500_RS13310 (JY500_13310) pgeF 2930632..2931378 (-) 747 WP_206253070.1 peptidoglycan editing factor PgeF -
  JY500_RS13315 (JY500_13315) rluD 2931371..2932273 (-) 903 WP_246479903.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JY500_RS13320 (JY500_13320) comL 2932425..2933171 (+) 747 WP_246479622.1 outer membrane protein assembly factor BamD Machinery gene
  JY500_RS13325 (JY500_13325) - 2933184..2933708 (+) 525 WP_206253073.1 DUF2946 family protein -
  JY500_RS13330 (JY500_13330) - 2933715..2935499 (-) 1785 WP_206253080.1 PDZ domain-containing protein -
  JY500_RS13335 (JY500_13335) - 2935511..2937505 (-) 1995 WP_206253082.1 M3 family metallopeptidase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28383.82 Da        Isoelectric Point: 6.7389

>NTDB_id=542590 JY500_RS13320 WP_246479622.1 2932425..2933171(+) (comL) [Niveibacterium microcysteis strain HC41]
MSSWFESDKGGKIDQRPAEEIYADAKDNLESGSYDRAVKLFEQLEAKYPYGRYAQQAQLEIAYAYYRAQDPAQASAAIDR
FIKLHPNHPNVDYAYYLKGLITFNEDQGFVGLIGQQDLTERDPKAALDSFQAFKELATRFPDSRYAEDAKVRMAYLVNAL
AKHEISVARYYQNRNAFLAAANRAQTTIKNFPNSPSVEDALAIMIFSYDKLGMKDLAADTRRVLALNYPQSRYNKDASPD
ARPWWKIW

Nucleotide


Download         Length: 747 bp        

>NTDB_id=542590 JY500_RS13320 WP_246479622.1 2932425..2933171(+) (comL) [Niveibacterium microcysteis strain HC41]
GTGAGCTCCTGGTTTGAATCGGACAAGGGCGGCAAGATCGACCAGCGCCCCGCCGAAGAGATTTACGCCGACGCGAAGGA
CAACCTGGAATCGGGGTCCTACGACCGCGCGGTGAAGCTTTTCGAGCAACTGGAAGCCAAGTACCCCTATGGCCGCTATG
CCCAGCAGGCACAGCTCGAAATCGCGTATGCGTACTACCGTGCCCAGGATCCGGCACAAGCCTCGGCGGCCATCGACCGC
TTCATCAAGCTGCATCCGAATCACCCGAACGTCGATTACGCCTACTACCTGAAAGGCCTGATCACCTTCAATGAGGATCA
GGGCTTCGTCGGCCTGATCGGCCAGCAGGATCTGACCGAGCGAGACCCGAAAGCTGCGCTCGATTCGTTCCAGGCGTTCA
AGGAGCTTGCGACGCGCTTCCCGGATAGCCGCTATGCGGAGGACGCCAAGGTTCGCATGGCCTATCTGGTCAACGCGCTG
GCAAAACACGAGATCAGCGTCGCACGCTACTACCAGAACCGCAACGCATTCCTCGCAGCGGCCAACCGGGCACAGACGAC
GATCAAGAATTTCCCGAATTCGCCCTCAGTCGAAGACGCGCTGGCGATCATGATCTTCAGCTACGACAAGCTGGGGATGA
AGGACTTGGCGGCGGACACCCGCCGCGTGCTGGCACTCAACTATCCACAAAGCCGCTACAACAAGGACGCGAGTCCCGAT
GCGCGGCCGTGGTGGAAGATCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

52.675

97.984

0.516
  comL Neisseria gonorrhoeae MS11

51.639

98.387

0.508