Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JS609_RS18210 Genome accession   NZ_CP071043
Coordinates   3524484..3525173 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate ELA2001105     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3519484..3530173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS18175 (JS609_03581) flgN 3519665..3520147 (-) 483 WP_032722609.1 flagellar protein FlgN -
  JS609_RS18180 (JS609_03582) flgM 3520163..3520429 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  JS609_RS18185 (JS609_03583) yvyF 3520510..3520929 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  JS609_RS18190 (JS609_03584) comFC 3521002..3521724 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  JS609_RS18195 (JS609_03585) comFB 3521688..3521984 (-) 297 WP_015483764.1 late competence protein ComFB -
  JS609_RS18200 (JS609_03586) comFA 3522044..3523435 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  JS609_RS18205 (JS609_03587) fakBA 3523541..3524386 (-) 846 WP_003244125.1 DegV family protein -
  JS609_RS18210 (JS609_03588) degU 3524484..3525173 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JS609_RS18215 (JS609_03589) degS 3525256..3526413 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  JS609_RS18220 (JS609_03590) yvyE 3526630..3527283 (+) 654 WP_003227979.1 YigZ family protein -
  JS609_RS18225 (JS609_03591) tagV 3527283..3528458 (+) 1176 WP_213414818.1 LCP family protein -
  JS609_RS18230 (JS609_03592) tagO 3528531..3529607 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=542544 JS609_RS18210 WP_003219701.1 3524484..3525173(-) (degU) [Bacillus subtilis isolate ELA2001105]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=542544 JS609_RS18210 WP_003219701.1 3524484..3525173(-) (degU) [Bacillus subtilis isolate ELA2001105]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1