Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JS609_RS18190 Genome accession   NZ_CP071043
Coordinates   3521002..3521724 (-) Length   240 a.a.
NCBI ID   WP_128993465.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3516002..3526724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS18155 (JS609_03577) fliW 3516142..3516573 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  JS609_RS18160 (JS609_03578) yviE 3516594..3517169 (-) 576 WP_015384781.1 DUF6470 family protein -
  JS609_RS18165 (JS609_03579) flgL 3517216..3518112 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  JS609_RS18170 (JS609_03580) flgK 3518123..3519646 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  JS609_RS18175 (JS609_03581) flgN 3519665..3520147 (-) 483 WP_032722609.1 flagellar protein FlgN -
  JS609_RS18180 (JS609_03582) flgM 3520163..3520429 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  JS609_RS18185 (JS609_03583) yvyF 3520510..3520929 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  JS609_RS18190 (JS609_03584) comFC 3521002..3521724 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  JS609_RS18195 (JS609_03585) comFB 3521688..3521984 (-) 297 WP_015483764.1 late competence protein ComFB -
  JS609_RS18200 (JS609_03586) comFA 3522044..3523435 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  JS609_RS18205 (JS609_03587) fakBA 3523541..3524386 (-) 846 WP_003244125.1 DegV family protein -
  JS609_RS18210 (JS609_03588) degU 3524484..3525173 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JS609_RS18215 (JS609_03589) degS 3525256..3526413 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27405.67 Da        Isoelectric Point: 9.4913

>NTDB_id=542542 JS609_RS18190 WP_128993465.1 3521002..3521724(-) (comFC) [Bacillus subtilis isolate ELA2001105]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKAYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=542542 JS609_RS18190 WP_128993465.1 3521002..3521724(-) (comFC) [Bacillus subtilis isolate ELA2001105]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGCTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GATCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAGCAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979