Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   JS608_RS19605 Genome accession   NZ_CP071042
Coordinates   3934733..3935896 (-) Length   387 a.a.
NCBI ID   WP_079004916.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3929733..3940896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS19575 (JS608_03913) - 3929998..3930417 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  JS608_RS19580 (JS608_03914) comFC 3930491..3931180 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  JS608_RS19585 (JS608_03915) - 3931186..3931470 (-) 285 WP_057080260.1 late competence development ComFB family protein -
  JS608_RS19590 (JS608_03916) comFA 3931528..3932913 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  JS608_RS19595 (JS608_03917) - 3933021..3933869 (-) 849 WP_024085866.1 DegV family protein -
  JS608_RS19600 (JS608_03918) degU 3933967..3934656 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JS608_RS19605 (JS608_03919) degS 3934733..3935896 (-) 1164 WP_079004916.1 two-component sensor histidine kinase DegS Regulator
  JS608_RS19610 (JS608_03920) - 3936119..3936766 (+) 648 WP_003151384.1 YigZ family protein -
  JS608_RS19615 (JS608_03921) - 3936771..3937985 (+) 1215 WP_079004917.1 LCP family protein -
  JS608_RS19620 (JS608_03922) - 3938075..3939151 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  JS608_RS19625 (JS608_03923) tuaH 3939284..3940480 (-) 1197 WP_079004918.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 44986.81 Da        Isoelectric Point: 7.1377

>NTDB_id=542473 JS608_RS19605 WP_079004916.1 3934733..3935896(-) (degS) [Bacillus amyloliquefaciens isolate ELA1901024]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=542473 JS608_RS19605 WP_079004916.1 3934733..3935896(-) (degS) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGGGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAAAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCTACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTTGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951