Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JS608_RS19580 Genome accession   NZ_CP071042
Coordinates   3930491..3931180 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3925491..3936180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS19545 (JS608_03907) fliW 3925582..3926013 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  JS608_RS19550 (JS608_03908) - 3926043..3926612 (-) 570 WP_003151397.1 DUF6470 family protein -
  JS608_RS19555 (JS608_03909) flgL 3926703..3927620 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  JS608_RS19560 (JS608_03910) flgK 3927632..3929149 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  JS608_RS19565 (JS608_03911) - 3929165..3929647 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JS608_RS19570 (JS608_03912) flgM 3929662..3929928 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JS608_RS19575 (JS608_03913) - 3929998..3930417 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  JS608_RS19580 (JS608_03914) comFC 3930491..3931180 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  JS608_RS19585 (JS608_03915) - 3931186..3931470 (-) 285 WP_057080260.1 late competence development ComFB family protein -
  JS608_RS19590 (JS608_03916) comFA 3931528..3932913 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  JS608_RS19595 (JS608_03917) - 3933021..3933869 (-) 849 WP_024085866.1 DegV family protein -
  JS608_RS19600 (JS608_03918) degU 3933967..3934656 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JS608_RS19605 (JS608_03919) degS 3934733..3935896 (-) 1164 WP_079004916.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=542470 JS608_RS19580 WP_196616643.1 3930491..3931180(-) (comFC) [Bacillus amyloliquefaciens isolate ELA1901024]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=542470 JS608_RS19580 WP_196616643.1 3930491..3931180(-) (comFC) [Bacillus amyloliquefaciens isolate ELA1901024]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603