Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   C695_RS07010 Genome accession   NC_018937
Coordinates   1421621..1422934 (-) Length   437 a.a.
NCBI ID   WP_000653622.1    Uniprot ID   -
Organism   Helicobacter pylori Rif1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1416621..1427934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C695_RS06980 (C695_07005) nadC 1417084..1417905 (-) 822 WP_000405980.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C695_RS06985 (C695_07010) nadA 1417905..1418915 (-) 1011 WP_001141770.1 quinolinate synthase NadA -
  C695_RS06990 (C695_07015) - 1418905..1419708 (-) 804 WP_000226149.1 phosphatidylserine decarboxylase -
  C695_RS06995 (C695_07020) - 1419702..1420208 (-) 507 WP_000953192.1 DUF6115 domain-containing protein -
  C695_RS07000 (C695_07025) - 1420221..1420715 (-) 495 WP_001862592.1 hypothetical protein -
  C695_RS07005 (C695_07030) mqnP 1420708..1421550 (-) 843 WP_229311982.1 menaquinone biosynthesis prenyltransferase MqnP -
  C695_RS07010 (C695_07035) comEC/comE3 1421621..1422934 (-) 1314 WP_000653622.1 ComEC/Rec2 family competence protein Machinery gene
  C695_RS07015 (C695_07040) - 1422931..1424397 (-) 1467 WP_000349722.1 replicative DNA helicase -
  C695_RS07020 (C695_07045) - 1424408..1425808 (-) 1401 WP_000954017.1 NAD(P)H-hydrate dehydratase -
  C695_RS07025 (C695_07050) crdS 1425811..1427004 (-) 1194 WP_000951935.1 copper-sensing histidine kinase CrdS -
  C695_RS07030 (C695_07055) crdR 1426979..1427620 (-) 642 WP_001169789.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50295.30 Da        Isoelectric Point: 9.8514

>NTDB_id=54238 C695_RS07010 WP_000653622.1 1421621..1422934(-) (comEC/comE3) [Helicobacter pylori Rif1]
MKDKTFQGAFELLTTPKEYLVCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHENALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLSSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLMRSFQAISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRLLSMPLTIPTISVPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=54238 C695_RS07010 WP_000653622.1 1421621..1422934(-) (comEC/comE3) [Helicobacter pylori Rif1]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACGACCCCCAAAGAATACCTGGTGTGTGGGGTGTTTTTAAG
CCTTTTATTGGCGATTAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGTTTGAGCG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAGGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATGAAAACGCTTTGGTGGGTAATTTATATCGCGCGTTATTTATAGGGGATAGCTTA
AATAAAGACTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTCCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TCTTGTTTTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATCGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTGGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTCCTTCGCCCTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment