Detailed information NTG0054225

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: C695_RS00220
• Genome accession: NC_018937
• Coordinates: 38475..39452 (+)
• Length: 325 a.a.
• NCBI ID: WP_001862530.1
• Uniprot ID: A0AAC8MZ36
• Organism: Helicobacter pylori Rif1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33475..44452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C695_RS00190 (C695_00160)	panD	34895..35248 (+)	354	WP_000142250.1	aspartate 1-decarboxylase	-
C695_RS00195 (C695_00165)	-	35251..35544 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
C695_RS00200 (C695_00170)	-	35544..36548 (+)	1005	WP_000468475.1	PDZ domain-containing protein	-
C695_RS00205 (C695_00175)	comB6	36556..37611 (+)	1056	WP_000786660.1	P-type conjugative transfer protein TrbL	Machinery gene
C695_RS08750	-	37627..37741 (+)	115	Protein_33	comB7 lipoprotein	-
C695_RS00215 (C695_00180)	comB8	37738..38475 (+)	738	WP_000660509.1	type IV secretion system protein	Machinery gene
C695_RS00220 (C695_00185)	comB9	38475..39452 (+)	978	WP_001862530.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
C695_RS00225 (C695_00190)	comB10	39445..40581 (+)	1137	WP_001045839.1	DNA type IV secretion system protein ComB10	Machinery gene
C695_RS00230 (C695_00195)	-	40651..42063 (+)	1413	WP_000694809.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
C695_RS00235 (C695_00200)	gmd	42105..43250 (+)	1146	WP_000659810.1	GDP-mannose 4,6-dehydratase	-
C695_RS00240 (C695_00205)	-	43243..44175 (+)	933	WP_001002442.1	GDP-L-fucose synthase family protein	-
C695_RS08990	-	44203..44419 (-)	217	Protein_40	anthranilate synthase component I	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37362.07 Da
• Isoelectric Point: 9.5485

>NTDB_id=54225 C695_RS00220 WP_001862530.1 38475..39452(+) (comB9) [Helicobacter pylori Rif1]
MRKVLYALVGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENMAENAPKDAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KAKDE

Nucleotide

• Length: 978 bp

>NTDB_id=54225 C695_RS00220 WP_001862530.1 38475..39452(+) (comB9) [Helicobacter pylori Rif1]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCTATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
CAACGATCGTATTTTGCTTATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTTATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCACAAACAACAA
ACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTAATGCCATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAGTCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAG
ATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTTGTCAAA
AAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	96.012	100	0.963