Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   UMNF18_RS05740 Genome accession   NZ_AGTD01000001
Coordinates   4356176..4356844 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli UMNF18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4351176..4361844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMNF18_RS05770 (UMNF18_4563) rfaQ 4351348..4352418 (-) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -
  UMNF18_RS05765 (UMNF18_4564) waaA 4352825..4354102 (+) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  UMNF18_RS05760 (UMNF18_4565) coaD 4354110..4354589 (+) 480 WP_001171878.1 pantetheine-phosphate adenylyltransferase -
  UMNF18_RS05755 (UMNF18_4566) mutM 4354628..4355437 (-) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  UMNF18_RS05750 (UMNF18_4567) rpmG 4355535..4355702 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  UMNF18_RS05745 (UMNF18_4568) rpmB 4355723..4355959 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  UMNF18_RS05740 (UMNF18_4569) radC 4356176..4356844 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  UMNF18_RS05735 (UMNF18_4570) coaBC 4357016..4358236 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  UMNF18_RS05730 (UMNF18_4571) dut 4358214..4358672 (+) 459 WP_000976070.1 dUTP diphosphatase -
  UMNF18_RS05725 (UMNF18_4572) slmA 4358779..4359375 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  UMNF18_RS05720 (UMNF18_4573) pyrE 4359412..4360053 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  UMNF18_RS05715 (UMNF18_4574) rph 4360118..4360834 (-) 717 WP_001247093.1 ribonuclease PH -
  UMNF18_RS05710 (UMNF18_4575) yicC 4360961..4361824 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=54224 UMNF18_RS05740 WP_001298959.1 4356176..4356844(-) (radC) [Escherichia coli UMNF18]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=54224 UMNF18_RS05740 WP_001298959.1 4356176..4356844(-) (radC) [Escherichia coli UMNF18]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment