Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JYB86_RS13240 Genome accession   NZ_CP070997
Coordinates   2816803..2817438 (+) Length   211 a.a.
NCBI ID   WP_205779150.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2811803..2822438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS13230 (JYB86_13230) - 2813922..2814737 (-) 816 WP_205779148.1 NAD(P)H-binding protein -
  JYB86_RS13235 (JYB86_13235) recG 2814771..2816816 (+) 2046 WP_205779149.1 ATP-dependent DNA helicase RecG -
  JYB86_RS13240 (JYB86_13240) comF 2816803..2817438 (+) 636 WP_205779150.1 ComF family protein Machinery gene
  JYB86_RS13245 (JYB86_13245) - 2817461..2817862 (-) 402 WP_168399737.1 NUDIX hydrolase -
  JYB86_RS13250 (JYB86_13250) - 2817865..2818458 (-) 594 WP_205779151.1 TIGR00730 family Rossman fold protein -
  JYB86_RS13255 (JYB86_13255) - 2818611..2819624 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  JYB86_RS13260 (JYB86_13260) - 2819764..2820051 (-) 288 WP_205779152.1 STAS domain-containing protein -
  JYB86_RS13265 (JYB86_13265) - 2820063..2820695 (-) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  JYB86_RS13270 (JYB86_13270) - 2820714..2821385 (-) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  JYB86_RS13275 (JYB86_13275) mlaE 2821385..2822164 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24424.42 Da        Isoelectric Point: 9.2130

>NTDB_id=542099 JYB86_RS13240 WP_205779150.1 2816803..2817438(+) (comF) [Acinetobacter indicus strain LYS68A]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASTDG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=542099 JYB86_RS13240 WP_205779150.1 2816803..2817438(+) (comF) [Acinetobacter indicus strain LYS68A]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGCGGTTATCACCATACCCTGCTGCTGGCTCAGGTGCTGGCACGTCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGACTGGAACGACTGGAGAATCTGGACCAGCAATTC
CAGCTACGGCCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCGATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCAGTGTGTATTGCCAGTACCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.024

99.052

0.545
  comF Acinetobacter baumannii strain A118

55.024

99.052

0.545