Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   C5N08_RS09390 Genome accession   NZ_CP086340
Coordinates   1964792..1965448 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain ESY003     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959792..1970448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5N08_RS09360 (C5N08_009370) dcyD 1960671..1961657 (+) 987 WP_039023114.1 D-cysteine desulfhydrase -
  C5N08_RS09365 (C5N08_009375) tcyL 1961672..1962340 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  C5N08_RS09370 (C5N08_009380) tcyN 1962337..1963089 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  C5N08_RS09375 (C5N08_009385) sdiA 1963319..1964041 (+) 723 WP_001154260.1 transcriptional regulator SdiA -
  C5N08_RS09380 (C5N08_009390) yecF 1964109..1964333 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  C5N08_RS09385 (C5N08_009395) yecU 1964320..1964496 (-) 177 WP_000590344.1 protein YecU -
  C5N08_RS23645 - 1964534..1964650 (-) 117 WP_001302039.1 hypothetical protein -
  C5N08_RS09390 (C5N08_009400) letA 1964792..1965448 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  C5N08_RS09395 (C5N08_009405) uvrC 1965445..1967277 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  C5N08_RS09400 (C5N08_009410) pgsA 1967334..1967882 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C5N08_RS09420 (C5N08_009430) yecA 1968531..1969196 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=542011 C5N08_RS09390 WP_000611328.1 1964792..1965448(+) (letA) [Escherichia coli strain ESY003]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=542011 C5N08_RS09390 WP_000611328.1 1964792..1965448(+) (letA) [Escherichia coli strain ESY003]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482