Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYA46_RS13245 Genome accession   NZ_CP070991
Coordinates   2660106..2660501 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBS2016-05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2655106..2665501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS13215 (JYA46_002643) - 2656308..2656712 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  JYA46_RS13220 (JYA46_002644) - 2657123..2657200 (+) 78 Protein_2575 hypothetical protein -
  JYA46_RS13225 (JYA46_002645) - 2657332..2657565 (+) 234 WP_000384523.1 DUF1146 family protein -
  JYA46_RS13230 (JYA46_002646) murA 2657676..2658941 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JYA46_RS13235 (JYA46_002647) fabZ 2658975..2659415 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JYA46_RS13240 (JYA46_002648) - 2659472..2659912 (-) 441 WP_000846746.1 YwpF-like family protein -
  JYA46_RS13245 (JYA46_002649) ssb 2660106..2660501 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  JYA46_RS13250 (JYA46_002650) sceD 2660890..2661585 (+) 696 WP_000751999.1 lytic transglycosylase SceD -
  JYA46_RS13255 (JYA46_002651) tenA 2661972..2662661 (+) 690 WP_000396067.1 thiaminase II -
  JYA46_RS13260 (JYA46_002652) thiD 2662654..2663484 (+) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JYA46_RS13265 (JYA46_002653) thiM 2663468..2664259 (+) 792 WP_001108484.1 hydroxyethylthiazole kinase -
  JYA46_RS13270 (JYA46_002654) thiE 2664261..2664902 (+) 642 WP_000483160.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=541995 JYA46_RS13245 WP_000932694.1 2660106..2660501(+) (ssb) [Staphylococcus aureus strain CBS2016-05]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=541995 JYA46_RS13245 WP_000932694.1 2660106..2660501(+) (ssb) [Staphylococcus aureus strain CBS2016-05]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTAGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992