Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   JYA46_RS07390 Genome accession   NZ_CP070991
Coordinates   1464989..1465558 (-) Length   189 a.a.
NCBI ID   WP_210994134.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBS2016-05     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459989..1470558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS07350 (JYA46_001470) - 1460463..1461071 (-) 609 WP_000020308.1 class I SAM-dependent methyltransferase -
  JYA46_RS07355 (JYA46_001471) rplL 1461246..1461614 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  JYA46_RS07360 (JYA46_001472) rplJ 1461657..1462157 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  JYA46_RS07365 (JYA46_001473) rplA 1462429..1463121 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  JYA46_RS07370 (JYA46_001474) rplK 1463329..1463751 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  JYA46_RS07375 (JYA46_001475) nusG 1463932..1464480 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  JYA46_RS07380 (JYA46_001476) secE 1464493..1464675 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  JYA46_RS07385 (JYA46_001477) rpmG 1464731..1464874 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  JYA46_RS07390 (JYA46_001478) sigH 1464989..1465558 (-) 570 WP_210994134.1 RNA polymerase sigma factor Regulator
  JYA46_RS07395 (JYA46_001479) - 1465639..1466163 (-) 525 WP_106875298.1 NYN domain-containing protein -
  JYA46_RS07400 (JYA46_001480) rlmB 1466163..1466909 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JYA46_RS07405 (JYA46_001481) - 1466917..1467321 (-) 405 WP_210994135.1 Mini-ribonuclease 3 -
  JYA46_RS07410 (JYA46_001482) cysS 1467314..1468714 (-) 1401 WP_210994136.1 cysteine--tRNA ligase -
  JYA46_RS07415 (JYA46_001483) cysE 1468698..1469345 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23069.90 Da        Isoelectric Point: 9.4995

>NTDB_id=541983 JYA46_RS07390 WP_210994134.1 1464989..1465558(-) (sigH) [Staphylococcus aureus strain CBS2016-05]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIQMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=541983 JYA46_RS07390 WP_210994134.1 1464989..1465558(-) (sigH) [Staphylococcus aureus strain CBS2016-05]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACAGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAAAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979