Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JYA46_RS05530 Genome accession   NZ_CP070991
Coordinates   1085335..1086321 (-) Length   328 a.a.
NCBI ID   WP_098817765.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBS2016-05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1080335..1091321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS05505 (JYA46_001101) - 1080595..1080942 (-) 348 WP_001242107.1 hypothetical protein -
  JYA46_RS05510 (JYA46_001102) - 1081128..1081721 (+) 594 WP_072491463.1 CYTH domain-containing protein -
  JYA46_RS05515 (JYA46_001103) - 1081825..1082190 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  JYA46_RS05520 (JYA46_001104) yjbH 1082213..1083019 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  JYA46_RS05525 (JYA46_001105) pepF 1083479..1085287 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  JYA46_RS05530 (JYA46_001106) coiA 1085335..1086321 (-) 987 WP_098817765.1 competence protein CoiA family protein Machinery gene
  JYA46_RS05535 (JYA46_001107) mecA 1086442..1087161 (-) 720 WP_210994293.1 adaptor protein MecA -
  JYA46_RS05540 (JYA46_001108) spxA 1087532..1087927 (-) 396 WP_072491461.1 transcriptional regulator SpxA -
  JYA46_RS05545 (JYA46_001109) trpS 1088221..1089210 (+) 990 WP_072491460.1 tryptophan--tRNA ligase -
  JYA46_RS05550 (JYA46_001110) - 1089328..1090950 (-) 1623 WP_210994294.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38787.35 Da        Isoelectric Point: 9.6529

>NTDB_id=541977 JYA46_RS05530 WP_098817765.1 1085335..1086321(-) (coiA) [Staphylococcus aureus strain CBS2016-05]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=541977 JYA46_RS05530 WP_098817765.1 1085335..1086321(-) (coiA) [Staphylococcus aureus strain CBS2016-05]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

97.561

100

0.976
  coiA Staphylococcus aureus N315

97.561

100

0.976