Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JYA46_RS02430 Genome accession   NZ_CP070991
Coordinates   427617..428303 (+) Length   228 a.a.
NCBI ID   WP_098817867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBS2016-05     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422617..433303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS02395 (JYA46_000479) yqeH 423144..424244 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  JYA46_RS02400 (JYA46_000480) aroE 424258..425064 (+) 807 WP_000666747.1 shikimate dehydrogenase -
  JYA46_RS02405 (JYA46_000481) yhbY 425068..425358 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  JYA46_RS02410 (JYA46_000482) nadD 425361..425930 (+) 570 WP_072491732.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  JYA46_RS02415 (JYA46_000483) yqeK 425920..426504 (+) 585 WP_098817869.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JYA46_RS02420 (JYA46_000484) rsfS 426505..426858 (+) 354 WP_001088020.1 ribosome silencing factor -
  JYA46_RS02425 (JYA46_000485) - 426861..427577 (+) 717 WP_098817868.1 class I SAM-dependent methyltransferase -
  JYA46_RS02430 (JYA46_000486) comEA 427617..428303 (+) 687 WP_098817867.1 ComEA family DNA-binding protein Machinery gene
  JYA46_RS02435 (JYA46_000487) - 428395..428856 (+) 462 WP_000439693.1 ComE operon protein 2 -
  JYA46_RS02440 (JYA46_000488) comEC 428861..431062 (+) 2202 WP_210994244.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYA46_RS02445 (JYA46_000489) holA 431119..432093 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  JYA46_RS02450 (JYA46_000490) rpsT 432138..432389 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25751.41 Da        Isoelectric Point: 9.6753

>NTDB_id=541963 JYA46_RS02430 WP_098817867.1 427617..428303(+) (comEA) [Staphylococcus aureus strain CBS2016-05]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLSDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVTGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=541963 JYA46_RS02430 WP_098817867.1 427617..428303(+) (comEA) [Staphylococcus aureus strain CBS2016-05]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCGAAATTAGAAGATGTTCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGAAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTACTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

97.797

99.561

0.974