Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C5N09_RS16325 Genome accession   NZ_CP086338
Coordinates   3374938..3375675 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EJN001     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369938..3380675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5N09_RS16310 (C5N09_016325) clpC 3370392..3372965 (-) 2574 WP_100774409.1 ATP-dependent chaperone ClpB Regulator
  C5N09_RS16315 (C5N09_016330) yfiH 3373095..3373826 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  C5N09_RS16320 (C5N09_016335) rluD 3373823..3374803 (-) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C5N09_RS16325 (C5N09_016340) comL 3374938..3375675 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C5N09_RS16330 (C5N09_016345) raiA 3375946..3376287 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C5N09_RS16335 (C5N09_016350) pheL 3376391..3376438 (+) 48 WP_010723158.1 phe operon leader peptide -
  C5N09_RS16340 (C5N09_016355) pheA 3376537..3377697 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  C5N09_RS16345 (C5N09_016360) tyrA 3377740..3378861 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C5N09_RS16350 (C5N09_016365) aroF 3378872..3379942 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C5N09_RS16355 (C5N09_016370) yfiL 3380152..3380517 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=541936 C5N09_RS16325 WP_000197686.1 3374938..3375675(+) (comL) [Escherichia coli strain EJN001]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=541936 C5N09_RS16325 WP_000197686.1 3374938..3375675(+) (comL) [Escherichia coli strain EJN001]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376