Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JYH18_RS04640 Genome accession   NZ_CP070986
Coordinates   978015..979001 (+) Length   328 a.a.
NCBI ID   WP_000959293.1    Uniprot ID   A0A641A950
Organism   Staphylococcus aureus strain WBG8287     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 973015..984001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYH18_RS04615 (JYH18_04615) opp4B 973228..974190 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  JYH18_RS04620 (JYH18_04620) opp4C 974202..975083 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  JYH18_RS04625 (JYH18_04625) trpS 975125..976114 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  JYH18_RS04630 (JYH18_04630) spxA 976409..976804 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  JYH18_RS04635 (JYH18_04635) mecA 977175..977894 (+) 720 WP_001217728.1 adaptor protein MecA -
  JYH18_RS04640 (JYH18_04640) coiA 978015..979001 (+) 987 WP_000959293.1 competence protein CoiA family protein Machinery gene
  JYH18_RS04645 (JYH18_04645) pepF 979049..980857 (+) 1809 WP_061653136.1 oligoendopeptidase F -
  JYH18_RS04650 (JYH18_04650) yjbH 981317..982123 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  JYH18_RS04655 (JYH18_04655) - 982146..982511 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  JYH18_RS04660 (JYH18_04660) - 982615..983208 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  JYH18_RS04665 (JYH18_04665) - 983394..983741 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38898.54 Da        Isoelectric Point: 9.7732

>NTDB_id=541922 JYH18_RS04640 WP_000959293.1 978015..979001(+) (coiA) [Staphylococcus aureus strain WBG8287]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=541922 JYH18_RS04640 WP_000959293.1 978015..979001(+) (coiA) [Staphylococcus aureus strain WBG8287]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A950

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

100

100

1
  coiA Staphylococcus aureus N315

97.561

100

0.976