Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   JYH18_RS00195 Genome accession   NZ_CP070986
Coordinates   44352..45980 (-) Length   542 a.a.
NCBI ID   WP_001186608.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WBG8287     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 37587..67886 44352..45980 within 0


Gene organization within MGE regions


Location: 37587..67886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYH18_RS00160 (JYH18_00160) mecA 37587..39596 (-) 2010 WP_001801873.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  JYH18_RS00165 (JYH18_00165) - 39693..40679 (+) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  JYH18_RS00170 (JYH18_00170) - 40651..40911 (+) 261 WP_001549961.1 type I restriction enzyme endonuclease domain-containing protein -
  JYH18_RS00175 (JYH18_00175) - 40902..42509 (-) 1608 Protein_32 IS1182 family transposase -
  JYH18_RS00180 (JYH18_00180) - 42561..43067 (-) 507 WP_001092189.1 DUF1643 domain-containing protein -
  JYH18_RS00185 (JYH18_00185) - 43082..43393 (-) 312 WP_000700851.1 DUF960 family protein -
  JYH18_RS00190 (JYH18_00190) - 43480..43830 (-) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  JYH18_RS00195 (JYH18_00195) ccrB 44352..45980 (-) 1629 WP_001186608.1 recombinase family protein Machinery gene
  JYH18_RS00200 (JYH18_00200) ccrA 46002..47351 (-) 1350 WP_000815640.1 recombinase family protein Machinery gene
  JYH18_RS00205 (JYH18_00205) - 47585..49372 (-) 1788 WP_000122620.1 DUF927 domain-containing protein -
  JYH18_RS00210 (JYH18_00210) - 49372..49662 (-) 291 WP_001036438.1 hypothetical protein -
  JYH18_RS00215 (JYH18_00215) - 49801..50850 (+) 1050 WP_000613248.1 hypothetical protein -
  JYH18_RS00220 (JYH18_00220) - 51413..52903 (+) 1491 WP_000554504.1 RNA-binding domain-containing protein -
  JYH18_RS00225 (JYH18_00225) cstB 53276..54594 (-) 1319 Protein_42 persulfide dioxygenase-sulfurtransferase CstB -
  JYH18_RS00230 (JYH18_00230) - 54650..54787 (+) 138 WP_001791883.1 hypothetical protein -
  JYH18_RS00235 (JYH18_00235) - 54784..55155 (+) 372 WP_001549968.1 HNH endonuclease -
  JYH18_RS00240 (JYH18_00240) - 55284..55904 (+) 621 WP_000673114.1 hypothetical protein -
  JYH18_RS00245 (JYH18_00245) - 56605..59634 (-) 3030 WP_000594505.1 type I restriction endonuclease -
  JYH18_RS00250 (JYH18_00250) - 59647..60957 (-) 1311 WP_000085808.1 restriction endonuclease subunit S -
  JYH18_RS00255 (JYH18_00255) - 60950..62737 (-) 1788 WP_001288670.1 class I SAM-dependent DNA methyltransferase -
  JYH18_RS00260 (JYH18_00260) - 62925..63146 (-) 222 WP_001015195.1 hypothetical protein -
  JYH18_RS00265 (JYH18_00265) - 63160..63663 (-) 504 WP_001092193.1 DUF1643 domain-containing protein -
  JYH18_RS00270 (JYH18_00270) - 63679..63990 (-) 312 WP_000700850.1 DUF960 family protein -
  JYH18_RS00275 (JYH18_00275) - 64083..64424 (-) 342 WP_000859158.1 SAUGI family uracil-DNA glycosylase inhibitor -
  JYH18_RS00280 (JYH18_00280) ccrB 64890..66515 (-) 1626 WP_000359817.1 recombinase family protein Machinery gene
  JYH18_RS00285 (JYH18_00285) ccrA 66537..67886 (-) 1350 WP_000806248.1 recombinase family protein Machinery gene

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62654.83 Da        Isoelectric Point: 9.7970

>NTDB_id=541910 JYH18_RS00195 WP_001186608.1 44352..45980(-) (ccrB) [Staphylococcus aureus strain WBG8287]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYD
EVQIKINNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=541910 JYH18_RS00195 WP_001186608.1 44352..45980(-) (ccrB) [Staphylococcus aureus strain WBG8287]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATCGACTGTGTTATG
GTATACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAGATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTACCACTAGGTTATGACAAAATACCAGATAGTAAACACGAGCTAATGATTAACCAACATGAAGCTAATATTGTAAAATA
TATATTCGAGTGCTATGCCAAAGGACATGGCTATCGTAAAATTGCCAATGCATTGAATCACAAAGGATATGTCACTAAAA
AGGGGAAACCTTTCAGTATTAGTTCAATCACATACATCTTAGCTAACCCTTTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAGAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACTCTTAAAGAC
GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG
TAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAAATAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGACTT
TATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

98.893

100

0.989