Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   JYH18_RS00285 Genome accession   NZ_CP070986
Coordinates   66537..67886 (-) Length   449 a.a.
NCBI ID   WP_000806248.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WBG8287     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 61537..72886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYH18_RS00260 (JYH18_00260) - 62925..63146 (-) 222 WP_001015195.1 hypothetical protein -
  JYH18_RS00265 (JYH18_00265) - 63160..63663 (-) 504 WP_001092193.1 DUF1643 domain-containing protein -
  JYH18_RS00270 (JYH18_00270) - 63679..63990 (-) 312 WP_000700850.1 DUF960 family protein -
  JYH18_RS00275 (JYH18_00275) - 64083..64424 (-) 342 WP_000859158.1 SAUGI family uracil-DNA glycosylase inhibitor -
  JYH18_RS00280 (JYH18_00280) ccrB 64890..66515 (-) 1626 WP_000359817.1 recombinase family protein Machinery gene
  JYH18_RS00285 (JYH18_00285) ccrA 66537..67886 (-) 1350 WP_000806248.1 recombinase family protein Machinery gene
  JYH18_RS00290 (JYH18_00290) - 68074..69843 (-) 1770 WP_000020211.1 DUF927 domain-containing protein -
  JYH18_RS00295 (JYH18_00295) - 69843..70139 (-) 297 WP_000220590.1 single-stranded DNA-binding protein -
  JYH18_RS00300 (JYH18_00300) - 70312..71826 (-) 1515 WP_000594571.1 hypothetical protein -
  JYH18_RS00305 (JYH18_00305) - 71971..72675 (+) 705 WP_000831222.1 FRG domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52370.09 Da        Isoelectric Point: 9.8433

>NTDB_id=541913 JYH18_RS00285 WP_000806248.1 66537..67886(-) (ccrA) [Staphylococcus aureus strain WBG8287]
MKQAIGYLRQSTTKQQSLAAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQTYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKARQGKLITTHAPFGYHYH
NGTFTIDTVKSPTVKAVFNYYLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKCKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIEIKTTLNHEQLIEKLAQGKIDAETFKEQTHSLHQQSKPISSISAYQIRKAFQ
NIIQQRFTLNMLYPYIDEINISKNKSLAGIYFKNEPLNIVKQTMKLSIV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=541913 JYH18_RS00285 WP_000806248.1 66537..67886(-) (ccrA) [Staphylococcus aureus strain WBG8287]
ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGC
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTATTATGTTGCTATCGTCTAAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAGCTCATGAAATTATGTCAAACGTATCATGTTCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAGACAAGGTAAACTAATTACAACACATGCGCCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAGTCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAACTTCATTAATCGCAAGCCTTATCAAGTGCGTAATATTATCCTCA
ATCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTAAAATGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAACCAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAACGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAATTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
AAGAACAAACGCACTCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAGCCT
CGCTGGCATCTATTTCAAAAACGAACCACTGAATATTGTAAAGCAGACTATGAAATTATCAATTGTATAA

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

94.655

100

0.947
  ccrA Staphylococcus aureus N315

74.61

100

0.746