Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   JX573_RS07500 Genome accession   NZ_CP070983
Coordinates   1566955..1567452 (-) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WBG8366     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1561955..1572452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JX573_RS07475 (JX573_07465) gcvPB 1562117..1563589 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  JX573_RS07480 (JX573_07470) gcvPA 1563582..1564928 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JX573_RS07485 (JX573_07475) gcvT 1564948..1566039 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  JX573_RS07490 (JX573_07480) - 1566198..1566722 (-) 525 WP_001015121.1 shikimate kinase -
  JX573_RS07495 (JX573_07485) - 1566712..1566858 (-) 147 WP_001789879.1 hypothetical protein -
  JX573_RS07500 (JX573_07490) comGF 1566955..1567452 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  JX573_RS07505 (JX573_07495) comGE 1567370..1567669 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  JX573_RS07510 (JX573_07500) comGD 1567656..1568102 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  JX573_RS07515 (JX573_07505) comGC 1568080..1568391 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JX573_RS07520 (JX573_07510) comGB 1568405..1569475 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  JX573_RS07525 (JX573_07515) comGA 1569447..1570421 (-) 975 WP_111064924.1 competence type IV pilus ATPase ComGA Machinery gene
  JX573_RS07530 (JX573_07520) - 1570473..1571096 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JX573_RS07535 (JX573_07525) - 1571093..1571422 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JX573_RS07540 (JX573_07530) - 1571422..1572408 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=541883 JX573_RS07500 WP_029694050.1 1566955..1567452(-) (comGF) [Staphylococcus aureus strain WBG8366]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=541883 JX573_RS07500 WP_029694050.1 1566955..1567452(-) (comGF) [Staphylococcus aureus strain WBG8366]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97