Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JYG34_RS01525 Genome accession   NZ_CP070982
Coordinates   350766..352010 (+) Length   414 a.a.
NCBI ID   WP_213659222.1    Uniprot ID   -
Organism   Pseudomonas entomophila strain Small     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345766..357010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG34_RS01505 (JYG34_01505) - 345774..348227 (-) 2454 WP_213659218.1 penicillin-binding protein 1A -
  JYG34_RS01510 (JYG34_01510) pilM 348397..349272 (+) 876 WP_213659219.1 pilus assembly protein PilM -
  JYG34_RS01515 (JYG34_01515) - 349269..349808 (+) 540 WP_213659220.1 PilN domain-containing protein -
  JYG34_RS01520 (JYG34_01520) - 349856..350806 (+) 951 WP_213659221.1 pilus assembly protein PilP -
  JYG34_RS01525 (JYG34_01525) pilQ 350766..352010 (+) 1245 WP_213659222.1 secretin N-terminal domain-containing protein Machinery gene
  JYG34_RS01530 (JYG34_01530) aroK 352015..352533 (+) 519 WP_213659223.1 shikimate kinase AroK -
  JYG34_RS01535 (JYG34_01535) aroB 352631..353728 (+) 1098 WP_213659224.1 3-dehydroquinate synthase -
  JYG34_RS01540 (JYG34_01540) - 353744..355363 (+) 1620 WP_213659225.1 AAA family ATPase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45166.75 Da        Isoelectric Point: 4.8140

>NTDB_id=541841 JYG34_RS01525 WP_213659222.1 350766..352010(+) (pilQ) [Pseudomonas entomophila strain Small]
MLVLLGVRATLAAEFQGESMSLNFQDVEVRAVLQVMADYAGINLVASDAVQGRVTLRLEEVPWDQALDLVLRSKGLGRRQ
EGNVLLVAPIAELAEQSRGAHLEQALDARLEPLRRELIPVHHAKASELAELLLASLADDGILAGRGSLSVDARTNTLVVA
QPADRLGEIRRLVTQLDVPVRQVMIEARIVEANIDYEKALGVRWGGPLYGQDNRLGSDLFVDLGVERATSALGVGLLRSD
ILLDLELSAMEKSGNGEIISQPRVVTADKETARILKGTEVPYQETTKSGATSISFREASLSLEVTPQITPDGKVIMEVRV
TKDEPDFVNALNNVPPIRKNEVNAKVRVTDGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFL
TPRIMSDQAIAVSR

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=541841 JYG34_RS01525 WP_213659222.1 350766..352010(+) (pilQ) [Pseudomonas entomophila strain Small]
ATGCTGGTGCTGTTGGGCGTACGGGCAACGCTGGCGGCTGAGTTTCAGGGCGAATCGATGTCGTTGAACTTCCAGGATGT
GGAAGTGCGTGCGGTATTGCAGGTAATGGCCGACTACGCCGGTATCAACCTGGTGGCCAGCGATGCCGTCCAGGGGCGAG
TCACCCTCAGGCTGGAGGAGGTGCCCTGGGACCAGGCACTCGACCTTGTATTACGCAGCAAGGGGTTGGGGCGCCGGCAG
GAGGGGAATGTGCTGTTGGTGGCGCCCATTGCCGAGCTCGCCGAGCAGTCGCGCGGCGCCCATCTGGAGCAGGCGCTGGA
CGCTCGGCTCGAGCCGTTGCGGCGGGAGCTTATACCGGTCCATCACGCCAAGGCGTCGGAGCTTGCCGAGCTGCTGCTGG
CGAGCCTGGCCGACGACGGCATCCTGGCCGGGCGCGGCAGCTTGAGCGTGGATGCACGCACCAATACGCTGGTGGTTGCC
CAGCCCGCGGATCGGTTGGGTGAAATCCGGCGGTTGGTGACCCAGCTCGATGTGCCTGTGCGCCAGGTCATGATCGAGGC
TCGCATCGTCGAGGCCAACATCGATTATGAAAAGGCCTTGGGCGTGCGCTGGGGTGGTCCGCTGTATGGCCAGGACAACC
GCCTGGGCAGTGATCTGTTCGTCGACCTGGGTGTGGAGCGGGCGACCTCGGCGCTTGGGGTCGGTTTGTTGCGCAGCGAC
ATCCTGCTCGACCTCGAGCTCAGCGCGATGGAAAAAAGCGGCAATGGCGAGATCATCTCCCAGCCCAGGGTCGTTACCGC
CGACAAGGAGACCGCGCGCATTCTCAAGGGCACCGAGGTTCCCTATCAGGAGACCACCAAGAGCGGTGCCACCTCCATCT
CGTTTCGCGAAGCCTCCCTGTCGTTGGAAGTGACACCGCAGATCACCCCGGATGGCAAGGTGATCATGGAGGTGCGGGTG
ACCAAGGACGAGCCGGATTTCGTCAATGCCCTGAACAACGTGCCCCCCATCCGCAAGAACGAAGTCAATGCCAAGGTGCG
GGTCACCGATGGCGAGACCATTGTGATTGGTGGCGTGTACTCGACGTCGCAGAACAATGTGGTCGACAAGGTGCCATTTT
TCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTG
ACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(43-88)

Bacterial type II/III secretion system short domain (Secretin_N)

(117-182)

Bacterial type II and III secretion system protein (Secretin)

(249-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

58.716

100

0.618
  comQ Acinetobacter baylyi ADP1

43.111

100

0.469
  pilQ Acinetobacter baumannii D1279779

41.83

100

0.464
  pilQ Acinetobacter baumannii strain A118

41.83

100

0.464
  pilQ Legionella pneumophila strain ERS1305867

43.78

100

0.442
  pilQ Legionella pneumophila strain Lp02

43.301

100

0.437
  pilQ Vibrio campbellii strain DS40M4

42.453

100

0.435
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.627

100

0.42
  pilQ Vibrio cholerae strain A1552

41.627

100

0.42
  pilQ Neisseria gonorrhoeae strain FA1090

37.232

100

0.377
  pilQ Neisseria meningitidis M1080

36.754

100

0.372
  pilQ Neisseria meningitidis MC58

36.754

100

0.372