Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JYG31_RS18665 Genome accession   NZ_CP070976
Coordinates   3628302..3628991 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain MBH1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3623302..3633991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS18630 (JYG31_18630) flgN 3623483..3623965 (-) 483 WP_095712910.1 flagellar protein FlgN -
  JYG31_RS18635 (JYG31_18635) flgM 3623981..3624247 (-) 267 WP_095712909.1 flagellar biosynthesis anti-sigma factor FlgM -
  JYG31_RS18640 (JYG31_18640) - 3624327..3624746 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  JYG31_RS18645 (JYG31_18645) comFC 3624820..3625542 (-) 723 WP_213418035.1 phosphoribosyltransferase family protein Machinery gene
  JYG31_RS18650 (JYG31_18650) - 3625506..3625802 (-) 297 WP_059292436.1 competence protein ComFB -
  JYG31_RS18655 (JYG31_18655) comFA 3625859..3627253 (-) 1395 WP_213418036.1 ATP-dependent helicase ComFA Machinery gene
  JYG31_RS18660 (JYG31_18660) - 3627360..3628205 (-) 846 WP_213418037.1 DegV family protein -
  JYG31_RS18665 (JYG31_18665) degU 3628302..3628991 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JYG31_RS18670 (JYG31_18670) degS 3629074..3630231 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  JYG31_RS18675 (JYG31_18675) - 3630448..3631086 (+) 639 WP_095712906.1 YigZ family protein -
  JYG31_RS18680 (JYG31_18680) - 3631101..3632093 (+) 993 WP_095712905.1 LCP family protein -
  JYG31_RS18685 (JYG31_18685) - 3632981..3633448 (+) 468 WP_249746121.1 hypothetical protein -
  JYG31_RS18690 (JYG31_18690) - 3633486..3633941 (+) 456 WP_213418038.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=541767 JYG31_RS18665 WP_003219701.1 3628302..3628991(-) (degU) [Bacillus halotolerans strain MBH1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=541767 JYG31_RS18665 WP_003219701.1 3628302..3628991(-) (degU) [Bacillus halotolerans strain MBH1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1