Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JYG31_RS18655 Genome accession   NZ_CP070976
Coordinates   3625859..3627253 (-) Length   464 a.a.
NCBI ID   WP_213418036.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3620859..3632253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS18620 (JYG31_18620) flgL 3621035..3621931 (-) 897 WP_095712912.1 flagellar hook-associated protein FlgL -
  JYG31_RS18625 (JYG31_18625) flgK 3621941..3623464 (-) 1524 WP_095712911.1 flagellar hook-associated protein FlgK -
  JYG31_RS18630 (JYG31_18630) flgN 3623483..3623965 (-) 483 WP_095712910.1 flagellar protein FlgN -
  JYG31_RS18635 (JYG31_18635) flgM 3623981..3624247 (-) 267 WP_095712909.1 flagellar biosynthesis anti-sigma factor FlgM -
  JYG31_RS18640 (JYG31_18640) - 3624327..3624746 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  JYG31_RS18645 (JYG31_18645) comFC 3624820..3625542 (-) 723 WP_213418035.1 phosphoribosyltransferase family protein Machinery gene
  JYG31_RS18650 (JYG31_18650) - 3625506..3625802 (-) 297 WP_059292436.1 competence protein ComFB -
  JYG31_RS18655 (JYG31_18655) comFA 3625859..3627253 (-) 1395 WP_213418036.1 ATP-dependent helicase ComFA Machinery gene
  JYG31_RS18660 (JYG31_18660) - 3627360..3628205 (-) 846 WP_213418037.1 DegV family protein -
  JYG31_RS18665 (JYG31_18665) degU 3628302..3628991 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JYG31_RS18670 (JYG31_18670) degS 3629074..3630231 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  JYG31_RS18675 (JYG31_18675) - 3630448..3631086 (+) 639 WP_095712906.1 YigZ family protein -
  JYG31_RS18680 (JYG31_18680) - 3631101..3632093 (+) 993 WP_095712905.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52908.98 Da        Isoelectric Point: 9.7290

>NTDB_id=541766 JYG31_RS18655 WP_213418036.1 3625859..3627253(-) (comFA) [Bacillus halotolerans strain MBH1]
MQTKTSESNSLFSKELQQQFQGRHLLRTEISFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEVISKQEELLIWAVCGAGKTELLFPG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISVLVKAASCFKNMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=541766 JYG31_RS18655 WP_213418036.1 3625859..3627253(-) (comFA) [Bacillus halotolerans strain MBH1]
ATGCAGACTAAGACATCAGAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGTTTCAGGGACGTCATCTGCTTAG
AACAGAAATCTCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTGTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGTAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGTACCGATGTTGTTTTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTCTGGTAAAAGCTGC
TTCCTGTTTTAAAAACATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.279

98.707

0.832