Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JYG31_RS13120 Genome accession   NZ_CP070976
Coordinates   2552109..2553839 (-) Length   576 a.a.
NCBI ID   WP_024122005.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2547109..2558839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS13100 (JYG31_13100) - 2547673..2547807 (+) 135 WP_024122000.1 hypothetical protein -
  JYG31_RS13105 (JYG31_13105) - 2547880..2548998 (+) 1119 WP_024122001.1 NADH-dependent flavin oxidoreductase -
  JYG31_RS13110 (JYG31_13110) spo0A 2549578..2550381 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  JYG31_RS13115 (JYG31_13115) spoIVB 2550657..2551934 (-) 1278 WP_024122004.1 SpoIVB peptidase -
  JYG31_RS13120 (JYG31_13120) recN 2552109..2553839 (-) 1731 WP_024122005.1 DNA repair protein RecN Machinery gene
  JYG31_RS13125 (JYG31_13125) argR 2553875..2554324 (-) 450 WP_010334883.1 arginine repressor ArgR -
  JYG31_RS13130 (JYG31_13130) - 2554421..2555266 (-) 846 WP_024122006.1 TlyA family RNA methyltransferase -
  JYG31_RS13135 (JYG31_13135) dxs 2555263..2557164 (-) 1902 WP_024122007.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JYG31_RS13140 (JYG31_13140) - 2557342..2558232 (-) 891 WP_095713259.1 polyprenyl synthetase family protein -
  JYG31_RS13145 (JYG31_13145) - 2558222..2558476 (-) 255 WP_213417730.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64720.40 Da        Isoelectric Point: 4.6280

>NTDB_id=541735 JYG31_RS13120 WP_024122005.1 2552109..2553839(-) (recN) [Bacillus halotolerans strain MBH1]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESSKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSQIRKTWAKKLAEEIHRELKSLYMEKSTFDTEFKV
RTATRDEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVTEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=541735 JYG31_RS13120 WP_024122005.1 2552109..2553839(-) (recN) [Bacillus halotolerans strain MBH1]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTGGTCGGTGGCCGCGGTTCATCTGAAT
TTGTCAGATATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTAGATAGCGGTCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTTAATGGCAAACTAGTAACGATTGCGTCGCTTAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAACCATCTTCAGCTTTTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGCTATCAGCGATATATGAAGCTGCTTAAAAAGTTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
ACACCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATCGAATCATCAAAGCTTGAACTGAACGAAGATGAGCAGCTGC
AAGAAGAGCGCCAGCAAATTTCAAATTTCGAGAAAATATTTGAATCACTGCAAAATGCTTATAACGCGCTGCGCAGCGAG
CAGGGCGGGCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
TTCTGAGAGTGTTTCGAACTCCTACTACCTTTTAGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCCGAGCGCTTGAATTTTATTGAGACGCGTCTTAATGAGATCAAGCAGCTGAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTGCAAAGCCT
GAAGCAGGAGCTGGATTCGGTTGGTAAAGATGTTGCAGTAGAAGCGGCAAACGTTTCCCAAATCCGAAAAACGTGGGCGA
AAAAGCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTCGATACGGAGTTTAAGGTC
AGAACGGCGACCCGCGATGAGGAAGCGCCGGTCGTAAACGGACAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCCACCAATACGGGCGAGCCGCTGAAATCTCTTTCTAAAGTCGCTTCCGGCGGAGAGCTGTCGAGGG
TCATGCTTGCCATTAAAAGCATTTTTTCCTCACAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCGATGGGATCACAAGTGCTATGCATTACGCACCT
GCCTCAGGTAGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGACGGAAATCGGACGCATGATAGCAGGAGTCGAAGTCACAGACTTGACGAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCCGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958