Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JYG31_RS13110 Genome accession   NZ_CP070976
Coordinates   2549578..2550381 (-) Length   267 a.a.
NCBI ID   WP_010334880.1    Uniprot ID   A0A9Q4HNW6
Organism   Bacillus halotolerans strain MBH1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2544578..2555381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS13085 (JYG31_13085) - 2545578..2546321 (-) 744 WP_024121997.1 glycerophosphodiester phosphodiesterase -
  JYG31_RS13090 (JYG31_13090) - 2546411..2547031 (-) 621 WP_024121998.1 N-acetylmuramoyl-L-alanine amidase -
  JYG31_RS13095 (JYG31_13095) - 2547054..2547344 (-) 291 WP_024121999.1 hypothetical protein -
  JYG31_RS13100 (JYG31_13100) - 2547673..2547807 (+) 135 WP_024122000.1 hypothetical protein -
  JYG31_RS13105 (JYG31_13105) - 2547880..2548998 (+) 1119 WP_024122001.1 NADH-dependent flavin oxidoreductase -
  JYG31_RS13110 (JYG31_13110) spo0A 2549578..2550381 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  JYG31_RS13115 (JYG31_13115) spoIVB 2550657..2551934 (-) 1278 WP_024122004.1 SpoIVB peptidase -
  JYG31_RS13120 (JYG31_13120) recN 2552109..2553839 (-) 1731 WP_024122005.1 DNA repair protein RecN Machinery gene
  JYG31_RS13125 (JYG31_13125) argR 2553875..2554324 (-) 450 WP_010334883.1 arginine repressor ArgR -
  JYG31_RS13130 (JYG31_13130) - 2554421..2555266 (-) 846 WP_024122006.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29719.20 Da        Isoelectric Point: 6.3913

>NTDB_id=541734 JYG31_RS13110 WP_010334880.1 2549578..2550381(-) (spo0A) [Bacillus halotolerans strain MBH1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=541734 JYG31_RS13110 WP_010334880.1 2549578..2550381(-) (spo0A) [Bacillus halotolerans strain MBH1]
GTGGAGAAAATTAAAGTTTGTGTTGCCGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCGTATAACGGACAGGAATGCCTGTCGCTATTTAAAGAAAAAGATCCGGATGTGCTCG
TCTTGGATATTATTATGCCGCATTTGGACGGACTTGCTGTTTTAGAGCGACTGAGAGAATCCGATCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCGC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTACAACGACAT
CGAGCTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAGA
GAGCGATCCGCCACGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATATCCTCATTGTTCGGTTATACAGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996