Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   JX000_RS01025 Genome accession   NZ_CP070964
Coordinates   220488..221153 (+) Length   221 a.a.
NCBI ID   WP_075778257.1    Uniprot ID   -
Organism   Staphylococcus sp. SB1-57     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 215488..226153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JX000_RS01000 (JX000_01000) - 216087..216536 (+) 450 WP_002452056.1 helix-turn-helix domain-containing protein -
  JX000_RS01005 (JX000_01005) - 216773..218236 (+) 1464 WP_206140783.1 poly-gamma-glutamate hydrolase family protein -
  JX000_RS01010 (JX000_01010) - 218415..218516 (+) 102 WP_015364644.1 SE2200 family small protein -
  JX000_RS01015 (JX000_01015) - 218599..220053 (-) 1455 WP_145506402.1 alkaline phosphatase -
  JX000_RS01020 (JX000_01020) - 220308..220466 (+) 159 WP_002452059.1 hypothetical protein -
  JX000_RS01025 (JX000_01025) braR 220488..221153 (+) 666 WP_075778257.1 response regulator transcription factor Regulator
  JX000_RS01030 (JX000_01030) braS 221159..222055 (+) 897 WP_145506399.1 sensor histidine kinase Regulator
  JX000_RS01035 (JX000_01035) - 222159..222905 (+) 747 WP_075778255.1 ABC transporter ATP-binding protein -
  JX000_RS01040 (JX000_01040) - 222923..224938 (+) 2016 WP_241004994.1 ABC transporter permease -
  JX000_RS01045 (JX000_01045) - 225039..225884 (+) 846 WP_145506393.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25431.47 Da        Isoelectric Point: 4.9540

>NTDB_id=541589 JX000_RS01025 WP_075778257.1 220488..221153(+) (braR) [Staphylococcus sp. SB1-57]
MKILIVEDDLVIAESLANELKNWNYDVKLAKQFSHILDDFKSYLPDLVLLDINLPTLNGFHWCQEIRKISNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSNNELNVKGCQLIADEAKLMFQGEVTQLSLTELQIIK
LLFQNEGKFVNRTALIEKCWESENYIDDNTLAVNMTRLRKKLNQIGLTDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=541589 JX000_RS01025 WP_075778257.1 220488..221153(+) (braR) [Staphylococcus sp. SB1-57]
ATGAAGATTTTGATAGTAGAAGATGACTTAGTCATTGCAGAAAGTTTAGCAAATGAACTTAAGAATTGGAACTATGACGT
TAAGTTGGCAAAACAGTTTTCTCATATTTTAGATGATTTCAAAAGCTATCTACCTGACTTAGTACTACTAGATATTAATT
TACCTACTTTAAATGGATTCCATTGGTGCCAAGAAATTAGAAAAATATCAAACGTACCTATTATATTTATCAGTTCACGG
ACGGATAATATGGATCAAATTATGGCGATTCAAATGGGTGGCGATGATTTTATTGAGAAACCATTCAATTTATCGTTAAC
AGTTGCAAAAGTACAAGCTTTATTACGACGAACTTATGATTTAGCTGTATCCAATAACGAATTAAATGTTAAAGGATGTC
AACTGATTGCTGATGAGGCAAAGTTAATGTTCCAAGGTGAGGTGACACAACTGTCTTTAACGGAACTTCAAATCATTAAA
CTGTTGTTTCAAAATGAAGGGAAATTTGTGAATCGAACAGCTCTGATTGAAAAATGTTGGGAATCAGAAAATTATATTGA
TGATAATACTTTGGCAGTGAACATGACACGATTACGAAAAAAATTAAATCAAATTGGCTTAACAGATTTTATTGAAACGA
AGAAAAATGTGGGTTATAGGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.638

100

0.796