Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JW907_RS10915 Genome accession   NZ_CP070960
Coordinates   2222670..2224367 (+) Length   565 a.a.
NCBI ID   WP_206200181.1    Uniprot ID   -
Organism   Thermosynechococcus sp. TA-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2217670..2229367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW907_RS10890 (JW907_10890) - 2218039..2218740 (-) 702 WP_206200176.1 PilN domain-containing protein -
  JW907_RS10895 (JW907_10895) pilM 2218752..2219831 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  JW907_RS10900 (JW907_10900) - 2220105..2220686 (-) 582 WP_206200178.1 L,D-transpeptidase -
  JW907_RS10905 (JW907_10905) - 2220716..2221147 (-) 432 WP_206200179.1 hypothetical protein -
  JW907_RS10910 (JW907_10910) - 2221318..2222547 (-) 1230 WP_206200180.1 acetate/propionate family kinase -
  JW907_RS10915 (JW907_10915) comA 2222670..2224367 (+) 1698 WP_206200181.1 phospholipase D-like domain-containing protein Machinery gene
  JW907_RS10920 (JW907_10920) - 2224395..2224907 (-) 513 WP_206200182.1 adenine phosphoribosyltransferase -
  JW907_RS10925 (JW907_10925) - 2224957..2226261 (-) 1305 WP_206200183.1 NCS2 family permease -
  JW907_RS10930 (JW907_10930) - 2226656..2228377 (+) 1722 WP_206200184.1 hypothetical protein -
  JW907_RS10935 (JW907_10935) - 2228395..2229186 (+) 792 WP_206200185.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63106.79 Da        Isoelectric Point: 9.0586

>NTDB_id=541556 JW907_RS10915 WP_206200181.1 2222670..2224367(+) (comA) [Thermosynechococcus sp. TA-1]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVVMENTYTAPWATYSPAQVSAMDPRMRERYNAWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATSANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQRVAVGDAMVTVRFSPTPRSQPWAASTNGLIGQTLRRARQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTLIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=541556 JW907_RS10915 WP_206200181.1 2222670..2224367(+) (comA) [Thermosynechococcus sp. TA-1]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCAATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCCTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGAGTGCGGGTACGAGTGGTGATGGAAAATACCTACACTGCGCCTTGGGCAACCTACA
GCCCTGCGCAAGTGAGCGCCATGGATCCGAGAATGCGGGAGCGCTACAACGCCTGGAAAGCCCTCGTGGATACCAATGGC
GATGGCCAACTCAGTGCTGCCGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAGGCCAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCTAAAGGCAGTATGCTCATGCACCACAAGTTTATCGTTATTGATAATCGCCAAGTCATTGCCA
CTAGTGCCAACTTTACCCTCAGTGATGTCCATGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGCCCCGCCGTGGCACGCCTATTTACTGAGGAATTCAACATTATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACGGGTGGCTGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCCTGGGCGGCCTCTACCAATGGCTTGATTGGCCAAACACTACGTCGAGCACGCCAA
AAAATTGATATGGCGCTCTTTGTTTTCTCCGATCAGGAGTTGTCCTACGTGCTTGAGGAACGCCATAACCAAGGGGTTAG
CATTCGTGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTAGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAAGGCGATAAGCTGCACCACAAGTATGGCGTGGTTGACGATCGCACGCTGATTGTGGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGCCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGTGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACGCCGACTACACGGGTAAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCCAAACTGGCGGCTGAAATTATCCGTGCTC
GCGAGCAAAAGCCCTTTCAATCCTTGGCGGATTTAGATGCTGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(313-460)

PLD-like domain (PLDc_2)

(81-259)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.47

100

0.496