Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   JW907_RS10895 Genome accession   NZ_CP070960
Coordinates   2218752..2219831 (-) Length   359 a.a.
NCBI ID   WP_225901572.1    Uniprot ID   -
Organism   Thermosynechococcus sp. TA-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2213752..2224831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW907_RS10880 (JW907_10880) - 2215066..2217225 (-) 2160 WP_206200174.1 AMIN domain-containing protein -
  JW907_RS10885 (JW907_10885) - 2217320..2218042 (-) 723 WP_206200175.1 type 4a pilus biogenesis protein PilO -
  JW907_RS10890 (JW907_10890) - 2218039..2218740 (-) 702 WP_206200176.1 PilN domain-containing protein -
  JW907_RS10895 (JW907_10895) pilM 2218752..2219831 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  JW907_RS10900 (JW907_10900) - 2220105..2220686 (-) 582 WP_206200178.1 L,D-transpeptidase -
  JW907_RS10905 (JW907_10905) - 2220716..2221147 (-) 432 WP_206200179.1 hypothetical protein -
  JW907_RS10910 (JW907_10910) - 2221318..2222547 (-) 1230 WP_206200180.1 acetate/propionate family kinase -
  JW907_RS10915 (JW907_10915) comA 2222670..2224367 (+) 1698 WP_206200181.1 phospholipase D-like domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39231.20 Da        Isoelectric Point: 4.2866

>NTDB_id=541555 JW907_RS10895 WP_225901572.1 2218752..2219831(-) (pilM) [Thermosynechococcus sp. TA-1]
MLGNLFAKPKQGLGIELTPERVNIVQLQRQKQGLKMTAMASVPLSEGAIEEGRIIDTTAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRLIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGTSLDEDGIERVEILLVGTPREVTDAYINA
FTQAGLQLTALEVTNFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNRKVPIGKERMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLSDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASIGQVDEFFSQRLN
YATTLVDPISLLGLQTPEEIPLEKRPALGTVIGLGLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=541555 JW907_RS10895 WP_225901572.1 2218752..2219831(-) (pilM) [Thermosynechococcus sp. TA-1]
GTGCTGGGAAATCTATTTGCAAAACCAAAGCAGGGCTTGGGGATTGAACTCACCCCAGAGCGGGTCAATATCGTACAGCT
TCAGCGGCAAAAGCAGGGTCTGAAAATGACCGCTATGGCCTCAGTGCCCTTGAGTGAAGGCGCCATTGAAGAAGGCCGCA
TCATTGACACCACCGCCGTCGCCGATGCCATCCGTCAAGGGATTGAGGATAAGCGCATCAAACAAAAAGAGGTGATCAGT
GCCATTCCCATGAATGAAGCCGTGATTCGCCTGATTCGCCTGCCTGCGGAATTACCCGACTACGAATTGCGGGAAGTGGT
TCTCATGCAGGAAGCCCCACTGTACCTGCCCTTTCCCCGTGAAGAGGCCGATGTTGACTATCAAAAGCTGGGAACCTCCC
TTGATGAAGATGGCATTGAGCGGGTAGAAATTTTGCTCGTGGGCACGCCCCGCGAAGTGACCGATGCCTATATCAATGCC
TTTACCCAAGCCGGTTTACAACTCACCGCCCTTGAAGTGACCAATTTTGCCCTCATGCGTACCCTGCGGGATTCACTACA
GCAGTTTGTGGGCGAAGCAGCAGCGATTATTGATATAGGCGACGAGGGCACAGAAATTAGCATCGTCAAAGATGGCATTC
CCCAGTTCAACCGCAAAGTGCCCATTGGCAAAGAACGGATGCAAGAAGCCATTAGCCGCGCCATGAACTTGCCGCCTTCG
ATGGGCGTTGACCTGATTGAGAATCTGACCGTTCCCCTAGAGCCGATGGATGTGACCGGAGCACTCAACCCCAGTGGTGC
CGCTATTTTGCGAGTGCTCTCCGATCTAGCAGACGAAATCCGCCGCTCCATTGACTTTTACCTCAACCAAGGGGAAAGTC
TAGAGGTCTCGCAGTTGCTGCTTGCCGGTCCCGGTGCCAGTATTGGTCAAGTGGATGAGTTTTTTAGTCAGCGGCTCAAC
TATGCCACCACTTTGGTTGACCCCATTAGTTTGCTGGGACTGCAAACCCCGGAAGAGATTCCCCTCGAAAAACGCCCTGC
CCTCGGCACGGTGATTGGTCTTGGTCTGCGTGGCGCTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

50.139

100

0.504