Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   IAK_RS0118315 Genome accession   NZ_AFXK01000001
Coordinates   3878443..3878772 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa 213BR     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3873443..3883772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAK_RS0118300 uvrB 3874829..3876841 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  IAK_RS0118305 - 3877029..3878225 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  IAK_RS0118315 comEA/comE1 3878443..3878772 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  IAK_RS0118320 - 3878963..3880960 (-) 1998 WP_003119734.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  IAK_RS32960 - 3881584..3882634 (-) 1051 Protein_3620 IS3 family transposase -
  IAK_RS0118335 - 3882712..3883731 (-) 1020 WP_003113413.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=54148 IAK_RS0118315 WP_003104586.1 3878443..3878772(-) (comEA/comE1) [Pseudomonas aeruginosa 213BR]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=54148 IAK_RS0118315 WP_003104586.1 3878443..3878772(-) (comEA/comE1) [Pseudomonas aeruginosa 213BR]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment