Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JW886_RS05950 Genome accession   NZ_CP070872
Coordinates   1203017..1203199 (-) Length   60 a.a.
NCBI ID   WP_205871563.1    Uniprot ID   A0AA45QQK9
Organism   Lactococcus taiwanensis strain K_LL004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1198017..1208199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS05930 (JW886_05930) - 1198647..1199540 (-) 894 WP_200407807.1 SDR family oxidoreductase -
  JW886_RS05935 (JW886_05935) - 1199955..1200635 (+) 681 WP_205871560.1 IS6 family transposase -
  JW886_RS09950 - 1200955..1201050 (-) 96 WP_420844218.1 putative holin-like toxin -
  JW886_RS05940 (JW886_05940) - 1201278..1202312 (-) 1035 WP_205871561.1 NAD-dependent epimerase/dehydratase family protein -
  JW886_RS05945 (JW886_05945) - 1202444..1202974 (+) 531 WP_205871562.1 TetR/AcrR family transcriptional regulator -
  JW886_RS05950 (JW886_05950) ssb 1203017..1203199 (-) 183 WP_205871563.1 hypothetical protein Machinery gene
  JW886_RS09940 - 1203391..1203792 (+) 402 Protein_1132 Spx/MgsR family RNA polymerase-binding regulatory protein -
  JW886_RS05965 (JW886_05965) - 1204030..1204581 (-) 552 Protein_1133 C39 family peptidase -
  JW886_RS05970 (JW886_05970) - 1205389..1205952 (-) 564 WP_075525670.1 DapH/DapD/GlmU-related protein -
  JW886_RS05975 (JW886_05975) - 1205972..1206721 (-) 750 WP_196756724.1 SDR family oxidoreductase -
  JW886_RS05980 (JW886_05980) - 1207057..1207656 (-) 600 WP_205871565.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6557.07 Da        Isoelectric Point: 3.6966

>NTDB_id=541213 JW886_RS05950 WP_205871563.1 1203017..1203199(-) (ssb) [Lactococcus taiwanensis strain K_LL004]
MCVTEVVVDTFQLLESRQNSENNQAPAATQPNNKSNVPGDSHDPFVGSEPLNINDDDLPF

Nucleotide


Download         Length: 183 bp        

>NTDB_id=541213 JW886_RS05950 WP_205871563.1 1203017..1203199(-) (ssb) [Lactococcus taiwanensis strain K_LL004]
GTGTGCGTCACTGAAGTGGTAGTTGATACCTTCCAACTCCTTGAAAGTCGTCAAAATTCTGAAAATAATCAAGCTCCTGC
AGCAACTCAACCCAATAATAAAAGCAACGTACCTGGCGATTCACACGATCCATTCGTAGGTAGTGAACCATTGAATATTA
ATGATGATGATTTACCATTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

37.037

100

0.5
  ssb Glaesserella parasuis strain SC1401

31.765

100

0.45