Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   JW886_RS00465 Genome accession   NZ_CP070872
Coordinates   86005..86496 (-) Length   163 a.a.
NCBI ID   WP_205872034.1    Uniprot ID   A0AA45KHT0
Organism   Lactococcus taiwanensis strain K_LL004     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 81005..91496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS00465 (JW886_00465) comX 86005..86496 (-) 492 WP_205872034.1 sigma-70 family RNA polymerase sigma factor Regulator
  JW886_RS00470 (JW886_00470) ezrA 86742..88472 (-) 1731 WP_205872035.1 septation ring formation regulator EzrA -
  JW886_RS00475 (JW886_00475) tsf 88653..89681 (-) 1029 WP_205872036.1 translation elongation factor Ts -
  JW886_RS00480 (JW886_00480) rpsB 89794..90561 (-) 768 WP_075526251.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19770.68 Da        Isoelectric Point: 6.2727

>NTDB_id=541192 JW886_RS00465 WP_205872034.1 86005..86496(-) (comX) [Lactococcus taiwanensis strain K_LL004]
MDDIQEKYGLEFNELFSEMRPIIYKLMKQLYINTWDYDDYFQEGMITLHELLQKITNLDHVHTKFKVAYHQHLIDEIRHI
KARKRGFDQLHPINVYDCADWIGSNLATPESEIVFNHLLEEVYDKLSTHYKELLVKQMHGEHLTRMQKYRLKEKIKAILF
DED

Nucleotide


Download         Length: 492 bp        

>NTDB_id=541192 JW886_RS00465 WP_205872034.1 86005..86496(-) (comX) [Lactococcus taiwanensis strain K_LL004]
ATGGATGACATTCAAGAAAAATACGGTTTAGAATTCAACGAATTATTCTCTGAGATGCGGCCGATAATTTATAAATTGAT
GAAGCAATTGTACATCAACACATGGGATTACGATGATTACTTCCAAGAGGGAATGATTACACTACACGAATTGCTACAGA
AAATTACAAATTTAGATCATGTACATACGAAATTTAAAGTGGCTTACCATCAGCACTTAATTGACGAAATTCGCCATATT
AAAGCACGAAAAAGAGGTTTTGATCAGCTCCATCCGATCAATGTTTATGACTGCGCAGATTGGATCGGCTCAAACCTTGC
TACACCTGAAAGCGAGATAGTTTTCAACCATCTACTAGAAGAAGTTTATGATAAACTTTCAACACACTATAAAGAACTGT
TGGTAAAGCAAATGCATGGGGAACATCTTACGAGAATGCAGAAGTATCGTTTAAAGGAAAAAATTAAAGCGATTTTATTT
GATGAAGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

60.131

93.865

0.564
  comX Lactococcus lactis subsp. lactis strain DGCC12653

58.824

93.865

0.552