Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JW980_RS15700 Genome accession   NZ_CP070866
Coordinates   3180191..3181759 (+) Length   522 a.a.
NCBI ID   WP_205667315.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3175191..3186759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS15680 (JW980_15680) - 3175668..3176972 (+) 1305 WP_010325700.1 homoserine dehydrogenase -
  JW980_RS15685 (JW980_15685) thrC 3177038..3178177 (+) 1140 WP_004692833.1 threonine synthase -
  JW980_RS15690 (JW980_15690) - 3178263..3179318 (-) 1056 WP_153041792.1 serine hydrolase -
  JW980_RS15695 (JW980_15695) - 3179534..3180169 (+) 636 WP_004692836.1 response regulator -
  JW980_RS15700 (JW980_15700) pilS 3180191..3181759 (+) 1569 WP_205667315.1 sensor histidine kinase Regulator
  JW980_RS15705 (JW980_15705) pilR 3181832..3183196 (+) 1365 WP_373430797.1 sigma-54-dependent transcriptional regulator Regulator
  JW980_RS15710 (JW980_15710) - 3183201..3184376 (-) 1176 WP_004692840.1 S41 family peptidase -
  JW980_RS15715 (JW980_15715) gpmI 3184395..3185942 (-) 1548 WP_183174692.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59591.09 Da        Isoelectric Point: 6.3384

>NTDB_id=541167 JW980_RS15700 WP_205667315.1 3180191..3181759(+) (pilS) [Acinetobacter johnsonii strain XY27]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRMRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFASCVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAHDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNDPEQALLQNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIHIRVYSYKNLVHIDVCDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=541167 JW980_RS15700 WP_205667315.1 3180191..3181759(+) (pilS) [Acinetobacter johnsonii strain XY27]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCATCTTATCGACTGTTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTACTGACCTATGAGCAGTTGTTTTCAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTTAAGCATGTGCGCATGCGCATACCACTTCAGCTC
ACCTTGCTGTTTATCGTCGATGTCATTAGCCTCAGCTTACTCACTTTCGCCACCGATGGTCCAAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCTCTTGTGTATTGGTCGATAAACAAAAAGCACTCATCATTACCTTGATTGCTGTGA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCACTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGATCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGATCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTTCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCAGCCTGTGCATTATTGGGTATCTCCCCGATTTATGCTCACGATAAA
TATCCTTTGTACAAAGCACAGCCTGATTTATTTGAACTCCTCAAATTCGACCAACTGAAGAATGGAGAAAAATTCCAATT
TACATCCCAGCTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAACCAAACACTGACCTTATTCG
TCCTACAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGTATT
GCCCATGAAATCCGCAATCCATTGGCTGCCATCACCCAAGCCAATGAATTGATGCAGGTGAACGATCCTGAGCAAGCCCT
GTTACAGAACATGATCGCCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCAACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCAGCTGAAGCCGAGCACATTCACATTCGAGTCTATAGCTATAAAAACCTCGTCCACATTG
ATGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.269

99.808

0.602