Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JW980_RS02060 Genome accession   NZ_CP070866
Coordinates   421694..422341 (-) Length   215 a.a.
NCBI ID   WP_058870363.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416694..427341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS02025 (JW980_02025) mlaE 417037..417816 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  JW980_RS02030 (JW980_02030) - 417816..418490 (+) 675 WP_005401297.1 outer membrane lipid asymmetry maintenance protein MlaD -
  JW980_RS02035 (JW980_02035) - 418511..419146 (+) 636 WP_205667560.1 phospholipid-binding protein MlaC -
  JW980_RS02040 (JW980_02040) - 419158..419445 (+) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  JW980_RS02045 (JW980_02045) - 419527..420540 (-) 1014 WP_004691361.1 CorA family divalent cation transporter -
  JW980_RS02050 (JW980_02050) - 420693..421292 (+) 600 WP_205667561.1 TIGR00730 family Rossman fold protein -
  JW980_RS02055 (JW980_02055) - 421289..421693 (+) 405 WP_205667562.1 NUDIX hydrolase -
  JW980_RS02060 (JW980_02060) comF 421694..422341 (-) 648 WP_058870363.1 ComF family protein Machinery gene
  JW980_RS02065 (JW980_02065) recG 422328..424373 (-) 2046 WP_205667563.1 ATP-dependent DNA helicase RecG -
  JW980_RS02070 (JW980_02070) - 424407..425222 (+) 816 WP_205667564.1 NAD-dependent epimerase/dehydratase family protein -
  JW980_RS02075 (JW980_02075) - 425414..425647 (+) 234 WP_029575124.1 DUF6500 family protein -
  JW980_RS02080 (JW980_02080) - 425832..426209 (+) 378 WP_029575123.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24910.14 Da        Isoelectric Point: 9.6092

>NTDB_id=541139 JW980_RS02060 WP_058870363.1 421694..422341(-) (comF) [Acinetobacter johnsonii strain XY27]
MPMFSHLLHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTVEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGIIQQIRLPKIQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=541139 JW980_RS02060 WP_058870363.1 421694..422341(-) (comF) [Acinetobacter johnsonii strain XY27]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTGCTACACAAAGCACAGCCTTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTGCATTCGGTCTGTCTGGACTGCTGGCAACAACTCCCACTGCATCCACAGACCGTTGAAAAACAAGAAC
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCACCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTATTCAGCAAATTCGCTTACCTAAAATACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCAGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGCAAAACGCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.701

90.233

0.512
  comF Acinetobacter baumannii D1279779

56.701

90.233

0.512