Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IAK_RS0102100 Genome accession   NZ_AFXK01000001
Coordinates   448922..449287 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa 213BR     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443922..454287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAK_RS0102070 pyrR 444544..445056 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  IAK_RS0102075 ruvX 445168..445602 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  IAK_RS0102080 - 445602..446171 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  IAK_RS0102085 - 446220..447113 (-) 894 WP_003084580.1 TonB family protein -
  IAK_RS0102090 gshB 447260..448213 (-) 954 WP_003100943.1 glutathione synthase -
  IAK_RS0102095 pilG 448468..448875 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  IAK_RS0102100 pilH 448922..449287 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  IAK_RS0102105 - 449338..449874 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  IAK_RS0102110 pilJ 449959..452007 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  IAK_RS0102115 pilK 452068..452943 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=54104 IAK_RS0102100 WP_003084587.1 448922..449287(+) (pilH) [Pseudomonas aeruginosa 213BR]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54104 IAK_RS0102100 WP_003084587.1 448922..449287(+) (pilH) [Pseudomonas aeruginosa 213BR]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment