Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TPH_RS01940 Genome accession   NC_018870
Coordinates   394326..395696 (+) Length   456 a.a.
NCBI ID   WP_028991151.1    Uniprot ID   -
Organism   Thermacetogenium phaeum DSM 12270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 389326..400696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TPH_RS01930 (Tph_c03790) - 391425..392993 (+) 1569 WP_015049544.1 FAD-dependent oxidoreductase -
  TPH_RS01935 (Tph_c03800) - 393240..393899 (-) 660 WP_015049545.1 HD-GYP domain-containing protein -
  TPH_RS01940 (Tph_c03810) radA 394326..395696 (+) 1371 WP_028991151.1 DNA repair protein RadA Machinery gene
  TPH_RS01945 (Tph_c03820) disA 395709..396947 (+) 1239 WP_015049547.1 DNA integrity scanning diadenylate cyclase DisA -
  TPH_RS01950 (Tph_c03830) - 397049..397444 (-) 396 WP_015049548.1 hypothetical protein -
  TPH_RS01955 (Tph_c03840) - 397634..398113 (+) 480 WP_015049549.1 CarD family transcriptional regulator -
  TPH_RS01960 (Tph_c03850) - 398271..399404 (+) 1134 WP_015049550.1 PIN/TRAM domain-containing protein -
  TPH_RS16275 (Tph_c03860) ispD 399397..400626 (+) 1230 WP_330216580.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48811.43 Da        Isoelectric Point: 7.9000

>NTDB_id=54103 TPH_RS01940 WP_028991151.1 394326..395696(+) (radA) [Thermacetogenium phaeum DSM 12270]
MGRTKTVFFCGECGYEAGKWLGRCPACGAWNSFCEAPGRQKRQGFSFLPAARQAPEPLTTAAPDAVEERLPGRFGELDRV
LGGGIVPGSVALLGGAPGIGKSTLLLQLAAQAAERHGIVLYVSGEESRRQVQMRARRLKLSSERLYFLAETDLEGICRAV
EELSPVLLIIDSIQTTFHPDLPLAAGSVGQLCRCTAELVRLAKSRNIACFLVGHVTKEGNLAGPRVLEHMVDVVLSFEGE
RHQNLRLLRAVKNRFGATDEVAVFAMGEGGLEEVENPSAIFLAGRSGGVPGSVVVAALEGTRPILVEIQALVCPAAYGSP
RRAATGVDYNRVVLIAAVLEKRVGLALAGQDIYVGVVGGLRIGEPAADLGIALALASSYRNAAVDREMVVAGEIGLTGEV
RAVGYMDQRLKEAARLGFRRVLVPWRNLDLQKKYPDLEFTGVKTVRDALDQAICQC

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=54103 TPH_RS01940 WP_028991151.1 394326..395696(+) (radA) [Thermacetogenium phaeum DSM 12270]
TTGGGGCGGACGAAAACGGTCTTTTTCTGTGGGGAGTGCGGCTATGAGGCCGGAAAGTGGTTGGGACGCTGTCCCGCCTG
CGGTGCCTGGAACTCCTTTTGTGAAGCCCCTGGGCGGCAGAAGAGGCAGGGGTTTTCCTTTTTGCCCGCCGCCCGGCAGG
CGCCGGAACCCCTGACCACCGCGGCTCCCGATGCTGTAGAGGAGCGCTTGCCCGGCCGTTTCGGGGAGCTGGACAGGGTG
CTCGGGGGCGGGATCGTGCCCGGCTCGGTGGCACTCCTCGGCGGCGCCCCCGGGATCGGAAAGTCCACCTTGCTCCTGCA
GCTGGCCGCACAGGCGGCGGAAAGGCACGGGATCGTTTTGTACGTCTCCGGGGAGGAGTCGCGGCGGCAGGTTCAGATGC
GGGCGCGGCGCTTGAAGCTCTCCTCCGAGCGCCTTTATTTCCTGGCAGAAACCGATCTCGAGGGGATCTGCCGGGCGGTT
GAGGAGCTCTCGCCGGTCCTGTTGATCATCGACTCGATTCAGACGACCTTTCACCCCGATCTCCCGCTGGCGGCGGGGAG
CGTCGGGCAGCTCTGCCGGTGCACCGCCGAACTCGTTAGGCTGGCCAAGAGCCGTAATATTGCCTGCTTTCTCGTCGGCC
ACGTTACCAAAGAGGGGAACCTGGCCGGCCCCCGGGTGCTGGAGCATATGGTGGACGTTGTTCTTTCCTTCGAGGGGGAG
CGCCACCAGAACCTGCGGCTCCTGCGCGCCGTCAAAAACCGCTTCGGGGCGACGGATGAGGTGGCCGTTTTCGCCATGGG
GGAAGGGGGGCTGGAGGAGGTGGAGAACCCTTCAGCCATTTTTCTGGCCGGACGCAGCGGAGGGGTTCCCGGTTCGGTGG
TGGTGGCGGCGCTGGAGGGAACGCGCCCGATCCTGGTGGAGATCCAGGCTCTGGTCTGCCCGGCCGCCTACGGGTCACCC
CGCCGAGCGGCGACCGGGGTCGACTATAACAGGGTTGTGCTCATAGCCGCCGTGCTGGAGAAGCGCGTCGGGCTCGCCCT
TGCCGGTCAGGACATCTACGTCGGCGTGGTGGGCGGTTTGCGGATCGGGGAACCTGCGGCCGATCTGGGGATAGCCCTCG
CTCTGGCCTCCAGCTACCGGAACGCCGCCGTCGACCGGGAAATGGTGGTGGCGGGGGAGATCGGGCTGACAGGTGAGGTG
CGGGCGGTGGGCTATATGGATCAGAGATTGAAGGAAGCAGCGCGTCTGGGGTTCAGGCGGGTGCTGGTGCCGTGGCGCAA
CCTGGACCTTCAGAAAAAATACCCGGACCTGGAGTTTACCGGGGTTAAGACGGTCAGGGACGCGCTCGATCAAGCCATTT
GTCAGTGTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-33)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(364-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.62

100

0.529
  radA Streptococcus mitis NCTC 12261

48.894

99.123

0.485
  radA Streptococcus pneumoniae Rx1

48.894

99.123

0.485
  radA Streptococcus pneumoniae D39

48.894

99.123

0.485
  radA Streptococcus pneumoniae R6

48.894

99.123

0.485
  radA Streptococcus pneumoniae TIGR4

48.894

99.123

0.485
  radA Streptococcus mitis SK321

48.894

99.123

0.485

Multiple sequence alignment