Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JOW61_RS06340 Genome accession   NZ_CP070844
Coordinates   1219782..1220933 (+) Length   383 a.a.
NCBI ID   WP_014479449.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain BN0     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context

Location: 1214782..1225933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOW61_RS06305 (JOW61_06260) yjbB 1215454..1216671 (+) 1218 WP_072592593.1 MFS transporter -
  JOW61_RS06310 (JOW61_06265) yjbC 1216835..1217413 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  JOW61_RS06315 (JOW61_06270) spx 1217594..1217989 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  JOW61_RS06320 (JOW61_06275) yjbE 1218032..1218688 (-) 657 WP_014479447.1 TerC family protein -
  JOW61_RS06325 (JOW61_06280) - 1218858..1218998 (+) 141 WP_119122854.1 hypothetical protein -
  JOW61_RS06330 (JOW61_06285) mecA 1218965..1219621 (+) 657 WP_014479448.1 adaptor protein MecA Regulator
  JOW61_RS06335 (JOW61_06290) - 1219616..1219738 (-) 123 WP_003245684.1 hypothetical protein -
  JOW61_RS06340 (JOW61_06295) coiA 1219782..1220933 (+) 1152 WP_014479449.1 competence protein CoiA Machinery gene
  JOW61_RS06345 (JOW61_06300) pepF 1221163..1222992 (+) 1830 WP_173401378.1 oligoendopeptidase F -
  JOW61_RS06350 (JOW61_06305) - 1223030..1223197 (-) 168 WP_003244944.1 hypothetical protein -
  JOW61_RS06355 (JOW61_06310) spxH 1223512..1224411 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  JOW61_RS06360 (JOW61_06315) yjbI 1224408..1224806 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  JOW61_RS06365 (JOW61_06320) cwlQ 1225061..1225795 (-) 735 WP_014479451.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 44861.98 Da        Isoelectric Point: 9.9417

>NTDB_id=540986 JOW61_RS06340 WP_014479449.1 1219782..1220933(+) (coiA) [Bacillus subtilis subsp. natto strain BN0]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGADDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKEINRLRLLFYEKRQTSFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=540986 JOW61_RS06340 WP_014479449.1 1219782..1220933(+) (coiA) [Bacillus subtilis subsp. natto strain BN0]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACACAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATTCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAGCTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCAAAGGAAATAAATCGCCTTAGGCTGCTGTTTTATGAGAAGCGGCAGACATCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTGTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTTGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.391

97.389

0.958