Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   LL135_RS02460 Genome accession   NZ_CP086162
Coordinates   468775..469437 (-) Length   220 a.a.
NCBI ID   WP_227898233.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI3134     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 463775..474437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL135_RS02420 (LL135_02420) - 464365..465219 (-) 855 WP_227898230.1 lambda-exonuclease family protein -
  LL135_RS02425 (LL135_02425) - 465221..465448 (-) 228 WP_052796437.1 helix-turn-helix domain-containing protein -
  LL135_RS02430 (LL135_02430) - 465439..465696 (-) 258 WP_052796436.1 hypothetical protein -
  LL135_RS02435 (LL135_02435) - 465687..465956 (-) 270 WP_002874357.1 hypothetical protein -
  LL135_RS02440 (LL135_02440) - 466752..467024 (-) 273 WP_227898232.1 hypothetical protein -
  LL135_RS02445 (LL135_02445) - 467168..467899 (+) 732 WP_002861653.1 hypothetical protein -
  LL135_RS02450 (LL135_02450) - 467944..468219 (-) 276 WP_002840259.1 hypothetical protein -
  LL135_RS02455 (LL135_02455) - 468206..468709 (-) 504 WP_002840261.1 Panacea domain-containing protein -
  LL135_RS02460 (LL135_02460) CJE1441 468775..469437 (-) 663 WP_227898233.1 DNA/RNA non-specific endonuclease Regulator
  LL135_RS02465 (LL135_02465) - 469457..470230 (-) 774 WP_002929400.1 hypothetical protein -
  LL135_RS02470 (LL135_02470) - 470227..470961 (-) 735 WP_022552241.1 helix-turn-helix transcriptional regulator -
  LL135_RS02475 (LL135_02475) - 471073..471291 (+) 219 WP_002826741.1 hypothetical protein -
  LL135_RS02480 (LL135_02480) - 471324..471650 (-) 327 WP_032599246.1 hypothetical protein -
  LL135_RS02485 (LL135_02485) - 471693..472691 (+) 999 WP_227898235.1 hypothetical protein -
  LL135_RS02490 (LL135_02490) - 472702..473352 (+) 651 WP_002871222.1 hypothetical protein -
  LL135_RS02495 (LL135_02495) - 473370..473750 (+) 381 WP_002896784.1 hypothetical protein -
  LL135_RS02500 (LL135_02500) - 473750..474136 (+) 387 WP_002795630.1 terminase small subunit -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25844.38 Da        Isoelectric Point: 9.9096

>NTDB_id=540849 LL135_RS02460 WP_227898233.1 468775..469437(-) (CJE1441) [Campylobacter jejuni strain SHI3134]
MKKLILLPLLSTLAFADYTQYKPSEDFAKYFTKQNCSQVLDKFYYLNCYDYNYKGTKAVAYRLEAENLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQAALKLGSLEVL
NLVNYDNNPQRIRNQIAIPSSYTKILKGENFKECYQVPNHKVENENIKNYKVNCDILTSS

Nucleotide


Download         Length: 663 bp        

>NTDB_id=540849 LL135_RS02460 WP_227898233.1 468775..469437(-) (CJE1441) [Campylobacter jejuni strain SHI3134]
GTGAAAAAACTCATACTTTTGCCATTGTTATCCACTCTAGCTTTTGCTGATTACACACAATATAAACCAAGCGAAGATTT
TGCCAAGTATTTTACTAAACAAAACTGCTCACAAGTTTTAGATAAATTCTATTATCTAAATTGCTATGATTATAATTATA
AAGGCACTAAAGCCGTAGCTTATAGATTAGAAGCGGAAAATTTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACCACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCACACTCT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCCCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGCAGCTTTGAAGCTTGGAAGTTTAGAGGTTTTG
AATTTAGTTAATTATGACAATAATCCACAAAGAATAAGAAATCAAATTGCCATTCCAAGCTCTTACACTAAGATTTTAAA
AGGCGAGAATTTTAAAGAATGTTATCAAGTGCCAAATCATAAAGTAGAAAATGAGAATATAAAAAATTATAAGGTTAATT
GTGATATTTTAACCAGCAGTTGA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

92.558

97.727

0.905
  CJE0566 Campylobacter jejuni RM1221

92.558

97.727

0.905