Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LL138_RS06140 Genome accession   NZ_CP086160
Coordinates   1193388..1194254 (-) Length   288 a.a.
NCBI ID   WP_057096526.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI5328     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188388..1199254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL138_RS06120 (LL138_06120) metF 1190241..1191089 (+) 849 WP_002860436.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  LL138_RS06125 (LL138_06125) - 1191111..1191302 (-) 192 WP_070305552.1 hypothetical protein -
  LL138_RS06130 (LL138_06130) atpB 1191299..1191979 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  LL138_RS06135 (LL138_06135) radA 1192048..1193388 (-) 1341 WP_057096527.1 DNA repair protein RadA Machinery gene
  LL138_RS06140 (LL138_06140) pilA 1193388..1194254 (-) 867 WP_057096526.1 signal recognition particle-docking protein FtsY Machinery gene
  LL138_RS06145 (LL138_06145) - 1194254..1194811 (-) 558 WP_002852864.1 TlpA family protein disulfide reductase -
  LL138_RS06150 (LL138_06150) - 1194894..1195520 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  LL138_RS06155 (LL138_06155) rny 1195441..1196994 (+) 1554 WP_002852704.1 ribonuclease Y -
  LL138_RS06160 (LL138_06160) - 1197003..1197560 (+) 558 WP_002852823.1 DedA family protein -
  LL138_RS06165 (LL138_06165) - 1197560..1198819 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32007.98 Da        Isoelectric Point: 5.5179

>NTDB_id=540776 LL138_RS06140 WP_057096526.1 1193388..1194254(-) (pilA) [Campylobacter jejuni strain SHI5328]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGAIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=540776 LL138_RS06140 WP_057096526.1 1193388..1194254(-) (pilA) [Campylobacter jejuni strain SHI5328]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGCGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434