Detailed information NTG0540701

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LLZ83_RS10355
• Genome accession: NZ_CP086130
• Coordinates: 2034094..2035203 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264863.1
• Uniprot ID: Q8DWQ8
• Organism: Streptococcus agalactiae strain MIN-180
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2029094..2040203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLZ83_RS10330 (LLZ83_10325)	-	2029466..2030305 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
LLZ83_RS10335 (LLZ83_10330)	pgsA	2030305..2030847 (-)	543	WP_000976003.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LLZ83_RS10340 (LLZ83_10335)	yfmH	2030970..2032253 (-)	1284	WP_000217755.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LLZ83_RS10345 (LLZ83_10340)	yfmF	2032255..2033499 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LLZ83_RS10350 (LLZ83_10345)	yaaA	2033738..2034091 (+)	354	WP_000384871.1	S4 domain-containing protein YaaA	-
LLZ83_RS10355 (LLZ83_10350)	recF	2034094..2035203 (+)	1110	WP_000264863.1	DNA replication/repair protein RecF	Machinery gene
LLZ83_RS10360 (LLZ83_10355)	-	2035215..2036081 (-)	867	WP_000398683.1	GRP family sugar transporter	-
LLZ83_RS10365 (LLZ83_10360)	-	2036137..2036799 (-)	663	WP_001865840.1	helix-turn-helix transcriptional regulator	-
LLZ83_RS10370 (LLZ83_10365)	guaB	2036874..2038355 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
LLZ83_RS10375 (LLZ83_10370)	-	2038512..2038997 (-)	486	WP_001034427.1	arginine repressor	-
LLZ83_RS10380 (LLZ83_10375)	-	2039007..2039687 (-)	681	WP_000628851.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42526.35 Da
• Isoelectric Point: 7.3132

>NTDB_id=540701 LLZ83_RS10355 WP_000264863.1 2034094..2035203(+) (recF) [Streptococcus agalactiae strain MIN-180]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFASQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=540701 LLZ83_RS10355 WP_000264863.1 2034094..2035203(+) (recF) [Streptococcus agalactiae strain MIN-180]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGCTAGCCAAGGGCAACAAAGAAGCCTCATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q8DWQ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.085	98.374	0.621
recF	Bacillus subtilis subsp. subtilis str. 168	44.565	99.729	0.444