Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD2   Type   Regulator
Locus tag   LLZ83_RS09430 Genome accession   NZ_CP086130
Coordinates   1849945..1850244 (-) Length   99 a.a.
NCBI ID   WP_000002567.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MIN-180     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844945..1855244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ83_RS09405 (LLZ83_09400) - 1845371..1845862 (-) 492 WP_000632643.1 PTS sugar transporter subunit IIB -
  LLZ83_RS09410 (LLZ83_09405) - 1845879..1846304 (-) 426 WP_000823120.1 PTS mannose transporter subunit IIA -
  LLZ83_RS09415 (LLZ83_09410) - 1846551..1847585 (-) 1035 WP_000369172.1 hypothetical protein -
  LLZ83_RS09420 (LLZ83_09415) - 1847814..1848968 (-) 1155 WP_000623419.1 ABC transporter permease subunit -
  LLZ83_RS09425 (LLZ83_09420) - 1848974..1849822 (-) 849 WP_000926588.1 ABC transporter ATP-binding protein -
  LLZ83_RS09430 (LLZ83_09425) comD/comD2 1849945..1850244 (-) 300 WP_000002567.1 GHKL domain-containing protein Regulator
  LLZ83_RS09435 (LLZ83_09430) comE/blpR 1850313..1851065 (-) 753 WP_001019932.1 response regulator transcription factor Regulator
  LLZ83_RS09440 (LLZ83_09435) - 1851342..1852157 (-) 816 WP_001029868.1 endonuclease/exonuclease/phosphatase family protein -
  LLZ83_RS09445 (LLZ83_09440) - 1852211..1854394 (-) 2184 WP_000795063.1 PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11343.79 Da        Isoelectric Point: 5.0958

>NTDB_id=540689 LLZ83_RS09430 WP_000002567.1 1849945..1850244(-) (comD/comD2) [Streptococcus agalactiae strain MIN-180]
MANMIDYSHHIEVSLETDEPKIAMSYFTLNHKQIFIIENSIVEERIDASRLFGYGASSKGEDRGLGLYNVMKVIDRYPNA
SISTNSEQHTFRQGLEIIF

Nucleotide


Download         Length: 300 bp        

>NTDB_id=540689 LLZ83_RS09430 WP_000002567.1 1849945..1850244(-) (comD/comD2) [Streptococcus agalactiae strain MIN-180]
TTGGCTAATATGATAGATTATAGCCACCATATTGAAGTTTCTTTAGAGACAGATGAACCTAAGATAGCCATGTCTTATTT
TACATTAAACCATAAGCAAATTTTTATCATAGAAAATTCGATAGTCGAGGAAAGAATAGATGCTTCACGTTTGTTTGGTT
ATGGAGCAAGTAGCAAGGGAGAAGATAGAGGGTTAGGCCTTTATAATGTCATGAAAGTTATTGACCGTTATCCCAATGCA
TCTATTAGTACAAATAGTGAACAACATACTTTCCGTCAGGGCTTAGAAATAATCTTTTAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(11-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus equinus JB1

40.86

93.939

0.384
  comD/comD3 Streptococcus equinus JB1

38.71

93.939

0.364