Detailed information NTG0540595

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LLZ90_RS10380
• Genome accession: NZ_CP086129
• Coordinates: 2048761..2049870 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain MIN-181
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2043761..2054870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLZ90_RS10355 (LLZ90_10360)	-	2044133..2044972 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
LLZ90_RS10360 (LLZ90_10365)	pgsA	2044972..2045514 (-)	543	WP_000239224.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LLZ90_RS10365 (LLZ90_10370)	yfmH	2045637..2046920 (-)	1284	WP_000217765.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LLZ90_RS10370 (LLZ90_10375)	yfmF	2046922..2048166 (-)	1245	WP_000706190.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LLZ90_RS10375 (LLZ90_10380)	yaaA	2048405..2048758 (+)	354	WP_000384867.1	S4 domain-containing protein YaaA	-
LLZ90_RS10380 (LLZ90_10385)	recF	2048761..2049870 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
LLZ90_RS10385 (LLZ90_10390)	-	2049882..2050748 (-)	867	WP_000398683.1	GRP family sugar transporter	-
LLZ90_RS10390 (LLZ90_10395)	-	2050804..2051466 (-)	663	WP_001871057.1	helix-turn-helix transcriptional regulator	-
LLZ90_RS10395 (LLZ90_10400)	guaB	2051541..2053022 (-)	1482	WP_000073441.1	IMP dehydrogenase	-
LLZ90_RS10400 (LLZ90_10405)	-	2053179..2053664 (-)	486	WP_001034427.1	arginine repressor	-
LLZ90_RS10405 (LLZ90_10410)	-	2053674..2054354 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=540595 LLZ90_RS10380 WP_000264870.1 2048761..2049870(+) (recF) [Streptococcus agalactiae strain MIN-181]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=540595 LLZ90_RS10380 WP_000264870.1 2048761..2049870(+) (recF) [Streptococcus agalactiae strain MIN-181]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447