Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6J48_RS11175 Genome accession   NZ_CP070518
Coordinates   2372225..2372854 (-) Length   209 a.a.
NCBI ID   WP_205470166.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2367225..2377854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS11140 (I6J48_11140) mlaE 2367551..2368330 (+) 780 WP_005038455.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  I6J48_RS11145 (I6J48_11145) - 2368330..2369013 (+) 684 WP_005038457.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6J48_RS11150 (I6J48_11150) - 2369040..2369681 (+) 642 WP_005038459.1 phospholipid-binding protein MlaC -
  I6J48_RS11155 (I6J48_11155) - 2369694..2369981 (+) 288 WP_080027838.1 lipid asymmetry maintenance protein MlaB -
  I6J48_RS11160 (I6J48_11160) - 2370054..2371067 (-) 1014 WP_004639553.1 magnesium and cobalt transport protein CorA -
  I6J48_RS11165 (I6J48_11165) - 2371226..2371807 (+) 582 WP_005038465.1 TIGR00730 family Rossman fold protein -
  I6J48_RS11170 (I6J48_11170) - 2371821..2372219 (+) 399 WP_205468489.1 NUDIX domain-containing protein -
  I6J48_RS11175 (I6J48_11175) comF 2372225..2372854 (-) 630 WP_205470166.1 ComF family protein Machinery gene
  I6J48_RS11180 (I6J48_11180) recG 2372847..2374892 (-) 2046 WP_151744427.1 ATP-dependent DNA helicase RecG -
  I6J48_RS11185 (I6J48_11185) - 2374913..2375728 (+) 816 WP_205468490.1 NAD(P)H-binding protein -
  I6J48_RS11190 (I6J48_11190) - 2375808..2376791 (+) 984 WP_205468491.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24259.43 Da        Isoelectric Point: 9.4715

>NTDB_id=540501 I6J48_RS11175 WP_205470166.1 2372225..2372854(-) (comF) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MFSFLNPQHLIHSLSPCLLCESGMREKHSLCKNCWEQLPWLKQIIQRNDQSVLVACDYAYPINRIIQQFKYEQKLHYQIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAF
TQEKRRYRRVLIIDDVVTTGSSIYALSQVLKQLGCTTIHAACLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=540501 I6J48_RS11175 WP_205470166.1 2372225..2372854(-) (comF) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGTTTAGTTTCTTAAATCCGCAGCATCTTATCCACTCACTCTCACCTTGCTTGTTGTGTGAGTCAGGTATGCGAGAAAA
ACATTCGCTCTGTAAAAACTGTTGGGAACAGTTACCTTGGCTTAAACAAATAATTCAACGTAATGATCAATCAGTTCTTG
TGGCCTGTGATTATGCATATCCAATCAATCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGTGAAATTTTACAACAACTCAAATTTCCCAAGGTACAAGCTATTGTACCTATGCCGATTTCGAATCAACGCTTAAT
TGAACGTGGTTTTAATCAGTCGCTATTGCTCGCAAATATCTTAAGCAAGCAATTAAAAATACCTGTTTGGCAGCCAGTGC
AACGCCTTGCTGAGCATTCACAAAAAGGGCTTTCTCGACTGGAACGCTTTGAGAACATCGAACAACAATTCATTGCATTT
ACTCAAGAAAAACGGCGTTATCGCCGTGTTCTGATTATTGATGATGTCGTTACCACTGGAAGTTCAATTTATGCCCTTAG
TCAGGTATTAAAGCAATTAGGATGTACAACCATTCATGCCGCCTGTTTAGCGGCAACTTTAACGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

86.124

100

0.861
  comF Acinetobacter baumannii D1279779

85.167

100

0.852