Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6J48_RS00900 Genome accession   NZ_CP070518
Coordinates   193499..193879 (-) Length   126 a.a.
NCBI ID   WP_004642631.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188499..198879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS00870 (I6J48_00870) tadA 188620..189123 (-) 504 WP_205469359.1 tRNA adenosine(34) deaminase TadA -
  I6J48_RS00875 (I6J48_00875) - 189129..190253 (-) 1125 WP_003651483.1 enoyl-CoA hydratase/isomerase family protein -
  I6J48_RS00880 (I6J48_00880) ung 190250..190963 (-) 714 WP_005041081.1 uracil-DNA glycosylase -
  I6J48_RS00885 (I6J48_00885) - 191013..191609 (-) 597 WP_003651480.1 6-carboxytetrahydropterin synthase -
  I6J48_RS00890 (I6J48_00890) gspK 191839..192798 (-) 960 WP_132070095.1 type II secretion system minor pseudopilin GspK -
  I6J48_RS00895 (I6J48_00895) xcpW 192798..193499 (-) 702 WP_205469360.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6J48_RS00900 (I6J48_00900) xcpV 193499..193879 (-) 381 WP_004642631.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6J48_RS00905 (I6J48_00905) - 193869..194423 (-) 555 WP_205469361.1 type II secretion system protein -
  I6J48_RS00910 (I6J48_00910) - 194433..195041 (-) 609 WP_004642629.1 TetR/AcrR family transcriptional regulator -
  I6J48_RS00915 (I6J48_00915) - 195078..195851 (-) 774 WP_003651468.1 TatD family hydrolase -
  I6J48_RS00920 (I6J48_00920) - 195869..196210 (-) 342 WP_003651467.1 PilZ domain-containing protein -
  I6J48_RS00925 (I6J48_00925) - 196221..197201 (-) 981 WP_205469362.1 DNA polymerase III subunit delta' -
  I6J48_RS00930 (I6J48_00930) kdsB 197215..197976 (-) 762 WP_205469363.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13930.08 Da        Isoelectric Point: 9.4463

>NTDB_id=540463 I6J48_RS00900 WP_004642631.1 193499..193879(-) (xcpV) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPIKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=540463 I6J48_RS00900 WP_004642631.1 193499..193879(-) (xcpV) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTAGCTTTAGCAATTTTTGCAGTAGCTGCTGTCGCGTTAACTAA
AGTGGCCATGCAATATACCCAATCTACTTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTAG
CCTTAATGGAGATAAATCAAGAATGGCTTCAAGGCACTCAAAGTAAGCAGGTTACTTCTCAAGGGGAAACTTGGCAGATT
GATAAATCAGCTGAATCTACAGTCAGCCCTAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAGG
AAAAGTTCAAAATGGTATTACCCACTTGGTATTTTTTAATTATCCAATAAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937