NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	I6J48_RS00895	Genome accession	NZ_CP070518
Coordinates	192798..193499 (-)	Length	233 a.a.
NCBI ID	WP_205469360.1	Uniprot ID	-
Organism	Acinetobacter calcoaceticus strain FDAARGOS_1218
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 187798..198499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J48_RS00865 (I6J48_00865)	-	188110..188550 (-)	441	WP_004642638.1	SRPBCC family protein	-
I6J48_RS00870 (I6J48_00870)	tadA	188620..189123 (-)	504	WP_205469359.1	tRNA adenosine(34) deaminase TadA	-
I6J48_RS00875 (I6J48_00875)	-	189129..190253 (-)	1125	WP_003651483.1	enoyl-CoA hydratase/isomerase family protein	-
I6J48_RS00880 (I6J48_00880)	ung	190250..190963 (-)	714	WP_005041081.1	uracil-DNA glycosylase	-
I6J48_RS00885 (I6J48_00885)	-	191013..191609 (-)	597	WP_003651480.1	6-carboxytetrahydropterin synthase	-
I6J48_RS00890 (I6J48_00890)	gspK	191839..192798 (-)	960	WP_132070095.1	type II secretion system minor pseudopilin GspK	-
I6J48_RS00895 (I6J48_00895)	xcpW	192798..193499 (-)	702	WP_205469360.1	type II secretion system minor pseudopilin GspJ	Machinery gene
I6J48_RS00900 (I6J48_00900)	xcpV	193499..193879 (-)	381	WP_004642631.1	type II secretion system minor pseudopilin GspI	Machinery gene
I6J48_RS00905 (I6J48_00905)	-	193869..194423 (-)	555	WP_205469361.1	type II secretion system protein	-
I6J48_RS00910 (I6J48_00910)	-	194433..195041 (-)	609	WP_004642629.1	TetR/AcrR family transcriptional regulator	-
I6J48_RS00915 (I6J48_00915)	-	195078..195851 (-)	774	WP_003651468.1	TatD family hydrolase	-
I6J48_RS00920 (I6J48_00920)	-	195869..196210 (-)	342	WP_003651467.1	PilZ domain-containing protein	-
I6J48_RS00925 (I6J48_00925)	-	196221..197201 (-)	981	WP_205469362.1	DNA polymerase III subunit delta'	-
I6J48_RS00930 (I6J48_00930)	kdsB	197215..197976 (-)	762	WP_205469363.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26545.47 Da Isoelectric Point: 10.0948

                                >NTDB_id=540462 I6J48_RS00895 WP_205469360.1 192798..193499(-) (xcpW) [Acinetobacter calcoaceticus strain FDAARGOS_1218]

MIKNKYFRSRSTASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAQHEVQLFELQDAYQQ

VLRDTLQIIPLSANQGGQLHPALELDNQVLRFSKAGVTDPLKQGLSPFERIEYRYDPDQKKLYRLKYSNLNTSNREQPLS

STLLSQVEQFQIMVLTPQEVTKWPEINIDPTKPEEFRKLPKGIKIQLTVAGVSYEWIYSLNQGNSSLSKQGGA

Nucleotide

Download Length: 702 bp

                                >NTDB_id=540462 I6J48_RS00895 WP_205469360.1 192798..193499(-) (xcpW) [Acinetobacter calcoaceticus strain FDAARGOS_1218]

ATGATAAAAAATAAATATTTTCGCTCTCGAAGCACAGCTTCACGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

TGCCTCAGGATTTACTTTAGTTGAGCTTTTAGTCGCAATTGCAATTTTTGCTGTTTTATCTTTGTTAGGTTGGAAGATTT

TTGATTATTTATTAAAAGTCCGTGATCGTAATGCTCAACATGAAGTGCAGCTATTTGAATTACAAGATGCGTATCAACAA

GTTTTGCGAGATACATTACAAATTATACCGTTATCGGCAAATCAAGGGGGGCAGCTTCATCCAGCATTAGAACTTGATAA

TCAAGTTCTTCGCTTTAGTAAGGCTGGTGTTACTGATCCTTTAAAACAAGGGTTATCACCTTTTGAGCGTATTGAATATC

GATATGATCCTGATCAAAAAAAGCTTTATCGTCTTAAATATAGCAATTTAAATACTTCAAACAGAGAGCAACCTTTATCT

AGCACTTTGTTGAGTCAAGTTGAACAGTTTCAAATTATGGTGCTTACGCCACAAGAAGTGACAAAGTGGCCAGAAATTAA

TATTGATCCCACAAAGCCAGAAGAGTTTAGAAAACTGCCGAAAGGAATAAAAATACAACTCACAGTTGCTGGTGTAAGTT

ATGAGTGGATTTATAGCTTAAACCAAGGGAATTCATCGCTCTCCAAACAAGGAGGAGCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	89.7	100	0.897

Detailed information NTG0540462