Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J31_RS02590 Genome accession   NZ_CP070515
Coordinates   453572..454135 (-) Length   187 a.a.
NCBI ID   WP_205435627.1    Uniprot ID   -
Organism   Leuconostoc falkenbergense strain FDAARGOS_1201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 448572..459135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J31_RS02565 (I6J31_02565) - 448602..449150 (+) 549 WP_036066470.1 hypothetical protein -
  I6J31_RS02570 (I6J31_02570) dnaB 449174..450637 (-) 1464 WP_205435624.1 replicative DNA helicase -
  I6J31_RS02575 (I6J31_02575) rplI 450639..451091 (-) 453 WP_205435625.1 50S ribosomal protein L9 -
  I6J31_RS02580 (I6J31_02580) - 451102..453129 (-) 2028 WP_205435626.1 DHH family phosphoesterase -
  I6J31_RS02585 (I6J31_02585) rpsR 453255..453539 (-) 285 WP_004911134.1 30S ribosomal protein S18 -
  I6J31_RS02590 (I6J31_02590) ssb 453572..454135 (-) 564 WP_205435627.1 single-stranded DNA-binding protein Machinery gene
  I6J31_RS02595 (I6J31_02595) rpsF 454167..454463 (-) 297 WP_004911142.1 30S ribosomal protein S6 -
  I6J31_RS02600 (I6J31_02600) pepV 454643..456088 (-) 1446 WP_205435628.1 dipeptidase PepV -
  I6J31_RS02605 (I6J31_02605) - 456070..456897 (-) 828 WP_188357241.1 energy-coupling factor transporter transmembrane component T -
  I6J31_RS02610 (I6J31_02610) - 456899..458575 (-) 1677 Protein_470 DUF3744 domain-containing protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20054.64 Da        Isoelectric Point: 4.5764

>NTDB_id=540448 I6J31_RS02590 WP_205435627.1 453572..454135(-) (ssb) [Leuconostoc falkenbergense strain FDAARGOS_1201]
MINRVVLIGRLTRDVELRYTQSGVAVGTFSLAVNRQFTNASGEREADFINAVIWRKAAENFANFTGKGALVAIEGRLQTR
NYENNAGQRVYVTEVVADNFSLLESRAESEKRRAQNGSSNSNAGSYNSGSNDHSFGGNDNSFSGVDPFASANQGSANKSA
ASENDAPNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=540448 I6J31_RS02590 WP_205435627.1 453572..454135(-) (ssb) [Leuconostoc falkenbergense strain FDAARGOS_1201]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGCGATGTGGAATTACGTTATACCCAATCGGGTGTAGCTGTCGG
CACGTTTAGCTTGGCGGTTAACCGTCAGTTCACTAACGCAAGTGGTGAACGTGAAGCTGACTTTATTAACGCAGTTATTT
GGCGTAAAGCAGCTGAAAACTTTGCTAACTTTACTGGAAAAGGCGCACTTGTTGCGATTGAAGGTCGTTTGCAAACAAGA
AATTATGAAAATAACGCAGGTCAACGTGTTTACGTGACTGAAGTTGTTGCGGATAATTTCTCATTACTAGAATCCCGTGC
AGAAAGTGAAAAGCGTCGTGCACAAAACGGCTCTTCTAACAGCAATGCGGGTAGCTATAATAGTGGCTCAAATGACCATT
CATTTGGCGGTAATGATAATTCGTTTAGTGGTGTTGATCCCTTTGCTAGTGCGAACCAAGGTTCAGCTAATAAGTCAGCA
GCATCTGAAAACGATGCCCCTAACCCATTTGCGGCTAGTGGCAACACTGAAATTGATATATCAGATGATGATTTACCATT
TTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.567

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.255

100

0.545