Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LGV82_RS17210 Genome accession   NZ_CP086104
Coordinates   3624159..3624806 (-) Length   215 a.a.
NCBI ID   WP_011000159.1    Uniprot ID   Q8Y2Y9
Organism   Ralstonia pseudosolanacearum strain RS650     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3619159..3629806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV82_RS17195 (LGV82_17190) - 3620421..3622238 (-) 1818 WP_028860096.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  LGV82_RS17200 (LGV82_17195) - 3622284..3623321 (-) 1038 WP_058908341.1 zinc-dependent alcohol dehydrogenase family protein -
  LGV82_RS17205 (LGV82_17200) - 3623561..3624055 (+) 495 WP_011000160.1 hypothetical protein -
  LGV82_RS17210 (LGV82_17205) letA 3624159..3624806 (-) 648 WP_011000159.1 response regulator transcription factor Regulator
  LGV82_RS17215 (LGV82_17210) - 3624809..3626185 (-) 1377 WP_265069502.1 PAS domain-containing sensor histidine kinase -
  LGV82_RS17220 (LGV82_17215) - 3626444..3627244 (+) 801 WP_020830925.1 helix-turn-helix domain-containing protein -
  LGV82_RS17225 (LGV82_17220) - 3627300..3627947 (-) 648 WP_011000156.1 BON domain-containing protein -
  LGV82_RS17230 (LGV82_17225) - 3627980..3628234 (-) 255 WP_021154795.1 TraR/DksA family transcriptional regulator -
  LGV82_RS17235 (LGV82_17230) - 3628391..3628921 (-) 531 WP_058908340.1 flavodoxin family protein -
  LGV82_RS17240 (LGV82_17235) - 3628967..3629620 (-) 654 WP_058908339.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23909.47 Da        Isoelectric Point: 6.2267

>NTDB_id=540393 LGV82_RS17210 WP_011000159.1 3624159..3624806(-) (letA) [Ralstonia pseudosolanacearum strain RS650]
MIRVMIADDHAVMRDGVRHILERAGDFEVACEASDGTQVLQLVRDHQPQVIVLDLSMPGRSGLELLRQLHDDHPTVRVLV
LTMHAEEQYVARAFRAGAAAYLTKESAATELVTALQKVARGGTYVSPPMAEKLAHSLGETSDEAAHMRLSDREMEVYRRL
VLGEPLTEIAASLCVSAKTISTYKMRLMDKLQLSSEAALVRYAIRHRLFSDDDTL

Nucleotide


Download         Length: 648 bp        

>NTDB_id=540393 LGV82_RS17210 WP_011000159.1 3624159..3624806(-) (letA) [Ralstonia pseudosolanacearum strain RS650]
ATGATCCGCGTGATGATTGCCGACGATCACGCCGTGATGCGCGATGGCGTGCGCCATATTCTGGAGCGCGCCGGAGATTT
CGAGGTTGCGTGCGAAGCCTCTGACGGCACTCAGGTATTGCAACTGGTGCGTGACCACCAGCCACAGGTGATCGTGCTTG
ACCTGTCAATGCCGGGGCGCAGCGGGCTGGAGCTGTTGCGTCAGTTACATGACGATCATCCGACGGTGCGCGTGTTGGTG
CTGACGATGCACGCAGAGGAGCAGTATGTGGCGCGCGCCTTCCGCGCAGGGGCGGCAGCCTACCTGACCAAGGAAAGTGC
CGCGACTGAATTGGTCACGGCGCTGCAGAAGGTGGCACGCGGTGGTACCTATGTCAGTCCACCCATGGCCGAGAAGCTTG
CGCACAGCCTGGGCGAGACCAGCGATGAGGCCGCGCACATGCGCCTGTCTGATCGCGAGATGGAGGTCTATCGCCGGCTA
GTGCTGGGTGAACCGCTCACGGAGATTGCCGCCAGCCTGTGTGTGAGCGCCAAGACCATTAGCACCTACAAGATGCGGTT
GATGGACAAGCTGCAGTTGTCTAGTGAGGCCGCACTCGTGCGCTACGCCATTCGTCATCGCTTGTTCTCTGACGACGACA
CCCTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

39.048

97.674

0.381
  letA Legionella pneumophila strain ERS1305867

39.048

97.674

0.381