Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LGV82_RS16495 Genome accession   NZ_CP086104
Coordinates   3479575..3480891 (-) Length   438 a.a.
NCBI ID   WP_011000296.1    Uniprot ID   Q8Y2K3
Organism   Ralstonia pseudosolanacearum strain RS650     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3474575..3485891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV82_RS16470 (LGV82_16460) - 3475511..3477001 (+) 1491 WP_011000301.1 tyrosinase family protein -
  LGV82_RS16475 (LGV82_16465) - 3477048..3477524 (+) 477 WP_104072027.1 signal peptidase -
  LGV82_RS16480 (LGV82_16470) - 3477666..3478226 (-) 561 WP_104072024.1 hypothetical protein -
  LGV82_RS16485 (LGV82_16475) - 3478326..3478841 (+) 516 WP_016724225.1 O-acetyl-ADP-ribose deacetylase -
  LGV82_RS16490 (LGV82_16480) - 3478945..3479496 (+) 552 WP_029240201.1 TlpA disulfide reductase family protein -
  LGV82_RS16495 (LGV82_16485) luxO 3479575..3480891 (-) 1317 WP_011000296.1 sigma-54 dependent transcriptional regulator Regulator
  LGV82_RS16500 (LGV82_16490) - 3480917..3482914 (-) 1998 WP_028860142.1 sensor histidine kinase -
  LGV82_RS16505 (LGV82_16495) - 3483018..3484304 (-) 1287 WP_011000294.1 dicarboxylate/amino acid:cation symporter -
  LGV82_RS16510 (LGV82_16500) - 3484719..3485045 (+) 327 WP_011000293.1 ferredoxin -
  LGV82_RS16515 (LGV82_16505) - 3485069..3485716 (+) 648 WP_011000292.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 47969.94 Da        Isoelectric Point: 6.0824

>NTDB_id=540391 LGV82_RS16495 WP_011000296.1 3479575..3480891(-) (luxO) [Ralstonia pseudosolanacearum strain RS650]
MSEGLNVLFIEDDPPVRQATAQSLELAGFQVQAYASAEEAVGRIDADFYGVVVSDLRLPGASGLDVLAHCQSFGTGIPVV
LVTGHGDITMAVQAMRDGAFDFIEKPFPAERLTETVRRAVERRALELENRALRRELAGPAAGTRIIGRSQAMASVRALID
NVAATDAPVLINGETGTGKELVARSLHTLSPRHDKPFIALNCGAVPEQIFESEMFGHEAGAFTGAGKRRIGKIEHASGGT
LFLDEIESMPLALQVKLLRVLQEGMLERLGSNASVRIDVRIVAAAKGDMEALIEAGGFRRDLYYRLNVVAIDLPPLRERR
EDIIPLFEHFLLEAAVRYQRPLPMLSERQRHELMQSNWPGNVRELRNAADRLVLGVGRTPVVSDAAEDGMPLKERVERYE
RTVIAETLARTGGSVHQAADILQVGRATLYDKIKRYGL

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=540391 LGV82_RS16495 WP_011000296.1 3479575..3480891(-) (luxO) [Ralstonia pseudosolanacearum strain RS650]
ATGTCCGAAGGCTTGAACGTTCTCTTCATCGAAGACGATCCGCCCGTCCGCCAGGCCACCGCGCAGAGCCTGGAGCTTGC
CGGCTTCCAGGTCCAGGCCTACGCCAGCGCCGAGGAGGCGGTCGGCCGGATCGACGCCGATTTCTACGGCGTGGTCGTCA
GCGACCTGCGCCTGCCGGGCGCCAGCGGGCTCGACGTGCTGGCGCATTGCCAGTCGTTCGGCACCGGCATTCCGGTGGTG
CTCGTGACCGGCCACGGTGATATCACGATGGCCGTGCAGGCGATGCGCGACGGCGCGTTCGATTTCATCGAGAAGCCGTT
CCCCGCCGAGCGCCTGACCGAGACCGTGCGCCGCGCTGTCGAGCGCCGCGCGCTGGAGCTGGAAAACCGCGCCCTGCGCC
GCGAGCTGGCGGGGCCGGCGGCGGGCACGCGCATCATCGGCCGCTCCCAGGCGATGGCCTCGGTGCGCGCGCTGATCGAT
AACGTGGCCGCCACCGACGCGCCGGTGCTCATCAACGGCGAGACCGGCACCGGCAAGGAACTGGTCGCGCGCAGCCTGCA
CACGCTGTCGCCGCGCCACGACAAGCCGTTCATCGCGCTGAACTGCGGCGCGGTGCCCGAGCAGATCTTCGAGAGCGAGA
TGTTCGGCCATGAGGCCGGCGCCTTCACCGGCGCGGGCAAGCGGCGCATCGGCAAGATCGAGCACGCCTCGGGCGGCACG
CTCTTCCTCGACGAGATCGAGAGCATGCCGCTGGCGCTGCAGGTCAAGCTGCTGCGCGTGCTGCAGGAGGGCATGCTCGA
GCGCCTGGGCTCCAACGCCTCGGTGCGCATCGACGTGCGCATCGTCGCCGCCGCCAAGGGCGACATGGAGGCGCTGATCG
AGGCCGGCGGCTTCCGGCGCGACCTGTACTATCGCCTGAACGTCGTCGCCATCGACCTGCCGCCGCTGCGCGAGCGCCGC
GAAGACATCATCCCGCTGTTCGAGCACTTCCTGCTGGAGGCCGCCGTGCGCTATCAGCGTCCGTTGCCGATGCTGTCCGA
GCGCCAACGGCACGAACTGATGCAATCGAACTGGCCCGGCAACGTGCGCGAGCTGCGCAATGCCGCCGATCGCCTGGTGC
TGGGCGTCGGCCGCACGCCCGTCGTCTCCGATGCGGCGGAAGACGGCATGCCGCTCAAGGAGCGGGTCGAGCGCTACGAG
CGCACGGTGATCGCGGAGACGCTGGCGCGCACCGGTGGCTCCGTCCACCAGGCCGCCGACATCCTGCAGGTCGGGCGCGC
GACGCTGTACGACAAGATCAAGCGCTACGGCCTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Bacterial regulatory protein, Fis family (HTH_8)

(397-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

38.626

96.347

0.372
  pilR Pseudomonas aeruginosa PAK

36.303

100

0.372